Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 7.4e-32 140.6 111 100.0
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 4.8e-15 84.7 52 78.8
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 1.5e-13 79.7 51 82.4
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 1.6e-10 69.7 54 70.4
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 2.7e-10 68.9 53 62.3
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.6e-10 68.2 53 62.3
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.0e-09 67.0 53 66.0
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 1.0e-09 67.0 53 66.0
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.8e-09 66.2 52 61.5
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 2.3e-09 65.9 52 57.7
Actinidia32520 Actinidia chinensis HOM05D003750 ORTHO05D004337 3.0e-09 65.5 40 75.0
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 3.0e-09 65.5 53 64.2
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 3.9e-09 65.1 50 72.0
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 3.9e-09 65.1 50 60.0
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 5.1e-09 64.7 50 70.0
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 6.7e-09 64.3 52 65.4
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 1.1e-08 63.5 52 61.5
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 1.5e-08 63.2 54 64.8
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.9e-08 62.8 53 66.0
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.9e-08 62.8 53 62.3
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.9e-08 62.8 53 56.6
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 2.5e-08 62.4 57 63.2
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 3.3e-08 62.0 54 64.8
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 3.3e-08 62.0 53 56.6
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 4.3e-08 61.6 54 63.0
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 5.7e-08 61.2 53 52.8
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 7.4e-08 60.8 53 56.6
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 7.4e-08 60.8 53 58.5
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.3e-07 60.1 54 61.1
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.3e-07 60.1 58 58.6
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.7e-07 59.7 55 56.4
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 2.2e-07 59.3 47 70.2
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 2.2e-07 59.3 53 66.0
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.8e-07 58.9 53 62.3
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 2.8e-07 58.9 44 65.9
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 3.7e-07 58.5 55 60.0
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 3.7e-07 58.5 54 59.3
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 4.8e-07 58.2 42 66.7
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 8.2e-07 57.4 50 58.0
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.1e-06 57.0 53 50.9
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.1e-06 57.0 51 52.9
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 1.4e-06 56.6 49 63.3
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.4e-06 56.6 49 63.3
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 1.4e-06 56.6 49 63.3
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.8e-06 56.2 54 53.7
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 1.8e-06 56.2 51 51.0
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.4e-06 55.8 54 53.7
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.1e-06 55.5 53 56.6
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 3.1e-06 55.5 49 61.2
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 3.1e-06 55.5 54 57.4
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 5.3e-06 54.7 53 50.9
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 5.3e-06 54.7 49 57.1
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 5.3e-06 54.7 53 64.2
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.1e-06 53.9 52 53.8


User provided reference genes

Program Settings