Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 2.7e-197 691.8 347 100.0
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 3.5e-88 329.3 303 58.1
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 6.2e-77 292.0 321 54.2
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 3.3e-70 269.6 237 59.9
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.7e-63 247.3 312 47.4
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 4.0e-60 236.1 267 49.4
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 3.4e-59 233.0 243 51.0
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 5.8e-59 232.3 260 48.5
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.2e-58 230.3 303 47.2
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.8e-58 229.6 296 49.3
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.4e-57 227.6 246 53.3
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.9e-57 227.3 306 46.1
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 7.1e-57 225.3 237 49.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.3e-57 224.9 257 48.2
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.2e-56 224.6 257 48.2
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.2e-56 224.6 254 48.8
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 1.0e-55 221.5 299 46.8
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.7e-55 220.7 295 45.1
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 2.3e-55 220.3 250 51.2
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.6e-53 214.2 259 46.7
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 8.1e-53 211.8 251 48.2
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 1.1e-52 211.5 266 46.6
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 3.1e-52 209.9 303 43.6
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 4.0e-52 209.5 301 43.9
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 2.0e-51 207.2 240 50.4
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 3.4e-51 206.5 253 46.6
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 5.8e-51 205.7 245 48.2
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 7.6e-51 205.3 243 48.6
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 9.9e-51 204.9 266 45.1
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.9e-50 203.4 270 45.2
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 2.9e-50 203.4 283 43.8
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 2.9e-50 203.4 262 45.8
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 3.0e-47 193.4 243 44.4
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 6.7e-47 192.2 299 41.1
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 8.7e-47 191.8 250 46.4
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 1.1e-46 191.4 263 43.3
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.5e-46 191.0 329 39.8
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.5e-46 191.0 288 43.1
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 1.9e-46 190.7 272 42.6
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 9.6e-46 188.3 250 46.0
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 2.8e-45 186.8 266 41.4
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.1e-44 184.9 246 48.0
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 6.9e-44 182.2 197 51.8
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.2e-43 181.4 295 40.7
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.7e-42 177.6 310 37.7
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 2.2e-42 177.2 253 40.7
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 2.2e-42 177.2 192 49.5
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 4.9e-42 176.0 238 43.7
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 1.1e-41 174.9 309 38.5
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 9.3e-41 171.8 202 49.0
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.2e-40 171.4 306 35.9
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 3.5e-40 169.9 256 42.6
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 4.6e-40 169.5 260 41.9
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 6.0e-40 169.1 257 39.7
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.3e-39 167.9 247 42.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.3e-39 167.2 316 38.0
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 3.9e-39 166.4 253 41.5
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.1e-39 166.0 303 36.6
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.6e-37 161.0 303 36.3
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.0e-34 151.8 266 38.0
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 1.7e-34 151.0 245 38.0
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.9e-33 147.5 232 43.5
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 2.5e-33 147.1 238 42.0
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 5.5e-33 146.0 225 41.8
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 1.2e-32 144.8 236 39.4
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 1.6e-32 144.4 174 47.7
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 2.1e-32 144.1 234 38.9
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 3.5e-32 143.3 246 39.4
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 4.6e-32 142.9 235 41.3
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 4.6e-32 142.9 324 35.5
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 6.1e-32 142.5 244 39.3
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 7.9e-32 142.1 324 35.5
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 3.0e-31 140.2 243 37.0
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 6.7e-31 139.0 243 38.7
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 6.7e-31 139.0 244 36.9
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 6.7e-31 139.0 243 38.7
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 5.7e-30 136.0 306 34.6
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-29 134.4 129 57.4
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 2.8e-29 133.7 243 36.6
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 8.2e-29 132.1 263 35.7
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 2.4e-28 130.6 239 36.4
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 6.9e-28 129.0 145 47.6
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 9.0e-28 128.6 293 29.4
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.5e-27 127.9 210 43.3
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 2.6e-27 127.1 173 43.9
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.0e-23 115.2 249 32.5
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 3.1e-20 103.6 158 38.0
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 3.2e-17 93.6 145 42.8
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 6.1e-16 89.4 134 43.3
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 1.0e-15 88.6 116 44.0
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 3.0e-15 87.0 301 25.6
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 8.8e-15 85.5 87 52.9
Nn3g18310 Nelumbo nucifera HOM05D001524 ORTHO05D001392 7.2e-09 65.9 240 24.2
PGR142G0849 Punica granatum HOM05D001524 ORTHO05D001392 2.1e-08 64.3 100 35.0
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 6.1e-08 62.8 100 34.0
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 3.0e-07 60.5 172 26.7
SEGI_18619 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 6.7e-07 59.3 208 25.0
Peaxi162Scf00305g00099 Petunia axillaris HOM05D001524 ORTHO05D001392 8.8e-07 58.9 179 25.1
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 1.1e-06 58.5 100 33.0
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 2.0e-06 57.8 106 33.0
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 2.6e-06 57.4 231 23.8
Ah.01g011010 Amaranthus hybridus HOM05D001524 ORTHO05D001392 3.3e-06 57.0 100 32.0


User provided reference genes

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