Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 7.3e-39 163.3 76 100.0
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.5e-31 138.3 76 85.5
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.3e-23 110.9 77 64.9
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.6e-23 110.5 77 64.9
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.6e-22 107.8 77 64.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 9.5e-15 83.2 80 58.8
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.1e-14 80.1 77 50.6
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 4.0e-13 77.8 78 46.2
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 4.0e-13 77.8 77 48.1
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.4e-10 69.3 79 43.0
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 2.4e-10 68.6 74 48.6
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 3.2e-10 68.2 79 43.0
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 4.1e-10 67.8 74 47.3
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 5.4e-10 67.4 73 49.3
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.1e-10 67.0 53 52.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 2.1e-09 65.5 74 50.0
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 2.1e-09 65.5 79 44.3
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 4.6e-09 64.3 74 45.9
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 7.8e-09 63.5 81 43.2
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 7.8e-09 63.5 70 44.3
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 1.0e-08 63.2 77 41.6
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 1.0e-08 63.2 77 41.6
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.7e-08 62.4 74 45.9
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.7e-08 62.4 67 46.3
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 2.3e-08 62.0 77 40.3
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 3.9e-08 61.2 81 43.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.9e-08 61.2 82 43.9
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 3.9e-08 61.2 68 45.6
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 5.1e-08 60.8 75 48.0
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 6.6e-08 60.5 75 44.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 8.7e-08 60.1 81 42.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 8.7e-08 60.1 81 42.0
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 1.1e-07 59.7 68 44.1
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-07 59.7 72 43.1
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.5e-07 59.3 72 45.8
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.9e-07 58.9 63 47.6
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 2.5e-07 58.5 73 41.1
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.5e-07 58.5 77 41.6
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 5.6e-07 57.4 74 41.9
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.6e-07 57.4 75 42.7
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 7.3e-07 57.0 72 41.7
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 9.6e-07 56.6 81 42.0
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 1.2e-06 56.2 73 41.1
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 2.1e-06 55.5 69 40.6
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.1e-06 55.5 76 44.7
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.1e-06 55.5 76 43.4
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 2.8e-06 55.1 70 40.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 2.8e-06 55.1 73 42.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 3.6e-06 54.7 77 39.0
PGSC0003DMG400018328 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.6e-06 54.7 82 42.7
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 4.7e-06 54.3 71 40.8
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 4.7e-06 54.3 80 42.5
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 6.2e-06 53.9 78 42.3


User provided reference genes

Program Settings