Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0111000 Rhododendron simsii HOM05D000107 ORTHO05D011435 1.9e-311 1071.6 558 100.0
Rhsim11G0005900 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.5e-117 425.2 239 85.8
Rhsim13G0165000 Rhododendron simsii HOM05D000107 ORTHO05D339848 3.5e-114 416.4 253 79.8
Rhsim08G0127700 Rhododendron simsii HOM05D000107 ORTHO05D338287 6.0e-114 415.6 253 79.8
RhsimUnG0234000 Rhododendron simsii HOM05D000107 ORTHO05D338744 1.6e-111 407.5 253 79.1
Rhsim07G0164800 Rhododendron simsii HOM05D000107 ORTHO05D339324 7.1e-99 365.5 236 76.3
Rhsim04G0134700 Rhododendron simsii HOM05D000107 ORTHO05D339839 1.6e-90 337.8 245 70.2
RhsimUnG0031500 Rhododendron simsii HOM05D000107 ORTHO05D339435 7.8e-90 335.5 239 71.5
Rhsim05G0118900 Rhododendron simsii HOM05D000107 ORTHO05D339067 2.6e-85 320.5 245 66.9
Rhsim05G0112400 Rhododendron simsii HOM05D011579 ORTHO05D011435 5.1e-81 306.2 266 72.9
Rhsim10G0115100 Rhododendron simsii HOM05D000107 ORTHO05D338535 1.1e-80 305.1 250 63.2
Rhsim09G0077900 Rhododendron simsii HOM05D000107 ORTHO05D339493 1.9e-72 277.7 248 59.3
Rhsim07G0165100 Rhododendron simsii HOM05D000107 ORTHO05D340254 2.1e-63 247.7 245 55.9
Rhsim01G0119600 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.9e-60 237.3 132 83.3
Rhsim02G0150600 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.5e-53 213.4 230 64.3
Rhsim10G0076500 Rhododendron simsii HOM05D003738 ORTHO05D011435 1.2e-45 188.7 94 91.5
Rhsim12G0096700 Rhododendron simsii HOM05D000107 ORTHO05D339961 2.0e-45 188.0 102 87.3
Rhsim03G0082400 Rhododendron simsii HOM05D000874 ORTHO05D001049 1.1e-43 182.2 100 85.0
Rhsim05G0087700 Rhododendron simsii HOM05D011579 ORTHO05D011435 7.0e-38 162.9 134 56.0
RhsimUnG0164400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.1e-35 155.6 134 53.7
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 1.8e-33 148.3 121 55.4
Rhsim01G0135900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.5e-32 145.2 138 49.3
Rhsim06G0103800 Rhododendron simsii HOM05D008700 ORTHO05D010645 1.8e-30 138.3 87 79.3
Rhsim08G0127400 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.0e-29 134.8 135 48.9
Rhsim07G0153700 Rhododendron simsii HOM05D000107 ORTHO05D339280 2.7e-29 134.4 75 76.0
Rhsim06G0103900 Rhododendron simsii HOM05D000107 ORTHO05D339821 1.7e-28 131.7 74 78.4
Rhsim08G0127500 Rhododendron simsii HOM05D000107 ORTHO05D340301 1.1e-27 129.0 90 66.7
Rhsim04G0154500 Rhododendron simsii HOM05D011579 ORTHO05D011435 3.0e-25 120.9 88 59.1
Rhsim09G0063300 Rhododendron simsii HOM05D000030 ORTHO05D000031 5.7e-24 116.7 107 49.5
RhsimUnG0076900 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.7e-23 115.2 73 61.6
Rhsim09G0078700 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.2e-21 109.0 134 41.8
Rhsim07G0148300 Rhododendron simsii HOM05D011579 ORTHO05D011435 7.7e-21 106.3 102 48.0
Rhsim03G0128500 Rhododendron simsii HOM05D000107 ORTHO05D338310 2.7e-18 97.8 65 67.7
vmacro16050 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 4.7e-18 97.1 124 39.5
vmacro03392 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 2.6e-16 91.3 119 39.5
Rhsim04G0130600 Rhododendron simsii HOM05D000107 ORTHO05D339952 7.5e-16 89.7 66 62.1
Rhsim10G0126300 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.2e-15 88.2 121 38.0
Rhsim09G0063800 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.3e-15 86.7 98 42.9
Rhsim01G0121300 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.8e-14 85.1 130 34.6
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.1e-11 75.9 72 40.3
Hma1.2p1_0293F.1_g116320 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.9e-11 75.1 72 40.3
Hma1.2p1_1995F.1_g310310 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 3.0e-09 67.8 62 41.9
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 1.5e-08 65.5 70 40.0
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 2.0e-08 65.1 101 33.7
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 2.6e-08 64.7 140 28.6
FAN24G0751 Fragaria x ananassa HOM05D000176 ORTHO05D002183 4.4e-08 63.9 87 34.5
Lj3A75T5 Lonicera japonica HOM05D000176 ORTHO05D000106 5.7e-08 63.5 116 32.8
Rhsim07G0168900 Rhododendron simsii HOM05D011579 ORTHO05D011435 5.7e-08 63.5 95 82.1
CSS0007507 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.5e-08 63.2 146 24.7
CSS0048717 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 9.8e-08 62.8 146 24.7
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-07 62.4 146 24.7
Lju1034C2T5 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-07 61.2 64 37.5
Hma1.2p1_0913F.1_g236030 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 3.7e-07 60.8 75 36.0
Lj1A172T27 Lonicera japonica HOM05D000176 ORTHO05D000106 6.4e-07 60.1 101 31.7
CSS0009167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-06 58.5 146 24.0
Rhsim12G0073100 Rhododendron simsii HOM05D000107 ORTHO05D339929 1.8e-06 58.5 39 66.7
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 7.0e-06 56.6 69 34.8


User provided reference genes

Program Settings