Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 1.2e-67 259.6 126 100.0
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.3e-61 239.6 124 91.9
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.7e-61 239.2 124 91.9
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 2.3e-61 238.8 125 88.8
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 2.3e-61 238.8 124 91.1
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 2.9e-61 238.4 124 91.1
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 3.8e-61 238.0 124 90.3
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 3.8e-61 238.0 124 91.9
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 8.6e-61 236.9 125 89.6
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 8.6e-61 236.9 124 90.3
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 8.6e-61 236.9 124 90.3
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 1.5e-60 236.1 124 91.1
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 1.5e-60 236.1 124 89.5
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.9e-60 235.7 124 89.5
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 2.5e-60 235.3 124 87.9
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 2.5e-60 235.3 124 88.7
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.5e-60 235.3 124 88.7
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 3.3e-60 235.0 124 91.1
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.3e-60 235.0 124 87.9
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.3e-60 235.0 124 87.9
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 4.2e-60 234.6 124 88.7
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 4.2e-60 234.6 124 88.7
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 4.2e-60 234.6 124 88.7
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 7.2e-60 233.8 124 87.9
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 7.2e-60 233.8 125 85.6
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 9.5e-60 233.4 124 89.5
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 9.5e-60 233.4 124 88.7
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.2e-59 233.0 124 88.7
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-59 233.0 124 88.7
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-59 233.0 124 88.7
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-59 233.0 125 88.0
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.2e-59 233.0 124 88.7
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 1.2e-59 233.0 124 88.7
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 1.2e-59 233.0 125 85.6
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.6e-59 232.6 125 86.4
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.6e-59 232.6 124 87.9
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 2.1e-59 232.3 124 89.5
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 2.1e-59 232.3 124 87.9
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-59 231.9 124 86.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-59 231.9 124 86.3
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 2.8e-59 231.9 124 87.1
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 3.6e-59 231.5 124 89.5
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.6e-59 231.5 124 87.1
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 4.7e-59 231.1 124 87.1
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 4.7e-59 231.1 124 87.1
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.7e-59 231.1 124 87.1
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 6.1e-59 230.7 124 87.1
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 6.1e-59 230.7 124 87.1
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 8.0e-59 230.3 124 87.9
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 1.0e-58 229.9 124 87.9
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 1.4e-58 229.6 124 87.9
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 1.4e-58 229.6 124 85.5
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 2.3e-58 228.8 126 83.3
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 2.3e-58 228.8 124 86.3
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.3e-58 228.8 124 85.5
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.3e-58 228.8 124 85.5
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 2.3e-58 228.8 124 85.5
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.0e-58 228.0 120 92.5
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 5.2e-58 227.6 124 85.5
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 5.2e-58 227.6 124 85.5
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 5.2e-58 227.6 124 86.3
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 6.8e-58 227.3 124 86.3
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 8.9e-58 226.9 124 85.5
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.2e-57 226.5 124 84.7
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 2.0e-57 225.7 124 86.3
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.0e-57 225.7 119 89.1
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 4.4e-57 224.6 126 87.3
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.4e-57 224.6 125 84.8
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 5.7e-57 224.2 124 82.3
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 7.5e-57 223.8 124 83.1
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 9.8e-57 223.4 124 85.5
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 1.3e-56 223.0 124 82.3
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 1.3e-56 223.0 124 82.3
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 1.3e-56 223.0 124 82.3
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 1.3e-56 223.0 124 82.3
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.3e-56 223.0 124 83.1
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 2.2e-56 222.2 124 81.5
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 2.9e-56 221.9 124 81.5
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 2.9e-56 221.9 124 81.5
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 2.9e-56 221.9 124 82.3
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 3.7e-56 221.5 124 81.5
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 3.7e-56 221.5 124 81.5
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 1.8e-55 219.2 124 83.1
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 7.0e-55 217.2 124 81.5
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 7.0e-55 217.2 124 81.5
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 7.0e-55 217.2 124 82.3
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 9.2e-55 216.9 124 82.3
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 1.2e-54 216.5 124 82.3
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 1.2e-54 216.5 124 81.5
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 2.0e-54 215.7 124 82.3
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 2.0e-54 215.7 124 81.5
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 2.7e-54 215.3 124 81.5
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 3.5e-54 214.9 126 81.0
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 4.6e-54 214.5 124 79.8
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 7.8e-54 213.8 124 80.6
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.0e-53 213.4 124 79.8
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 1.3e-53 213.0 124 81.5
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 2.9e-53 211.8 124 81.5
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 3.6e-51 204.9 124 79.0
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.8e-50 202.6 121 76.0
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 3.1e-50 201.8 125 75.2
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 8.9e-50 200.3 122 77.9
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 3.4e-49 198.4 120 77.5
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 3.4e-49 198.4 122 77.0
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 6.4e-48 194.1 123 77.2
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 8.3e-48 193.7 123 75.6
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.4e-47 192.2 120 75.0
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 2.0e-46 189.1 194 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 1.3e-45 186.4 125 68.0
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 1.5e-44 183.0 124 71.8
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 1.9e-44 182.6 121 69.4
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 9.8e-41 170.2 125 64.8
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 4.9e-40 167.9 125 63.2
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 1.4e-39 166.4 138 60.9
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 9.2e-39 163.7 124 69.4
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 1.0e-37 160.2 119 61.3
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.7e-35 151.4 75 90.7
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 8.1e-35 150.6 76 89.5
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.1e-34 150.2 80 87.5
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 1.4e-34 149.8 92 75.0
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 1.4e-34 149.8 132 62.1
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 1.8e-34 149.4 75 88.0
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 3.1e-34 148.7 74 89.2
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 3.1e-34 148.7 74 89.2
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 2.2e-32 142.5 74 86.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 6.4e-32 141.0 74 82.4
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 6.4e-32 141.0 74 82.4
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.3e-29 133.3 73 80.8
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 1.6e-27 126.3 76 78.9
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.4e-26 123.2 139 51.8
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 5.4e-23 111.3 125 42.4
Sopen11g008620 Solanum pennellii HOM05D000147 ORTHO05D004360 7.6e-17 90.9 61 75.4
ClCG03G009140 Citrullus lanatus HOM05D005489 ORTHO05D006629 2.9e-16 89.0 67 68.7
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 4.2e-15 85.1 47 78.7
PRCOL_00003843 Prasinoderma coloniale HOM05D005489 ORTHO05D006629 9.3e-15 84.0 110 44.5
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 3.0e-13 79.0 156 39.7
Cre03.g159300 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 5.6e-12 74.7 115 39.1
Solyc11g013660.1 Solanum lycopersicum HOM05D005489 ORTHO05D006629 3.6e-11 72.0 70 57.1
Os08g0469200 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 1.4e-10 70.1 68 54.4
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 7.6e-09 64.3 35 77.1


User provided reference genes

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