Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 3.9e-75 284.6 138 100.0
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 4.5e-31 138.3 88 76.1
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 2.9e-25 119.0 62 91.9
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 2.0e-23 112.8 62 88.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.8e-23 110.9 84 69.0
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 4.3e-21 105.1 96 56.2
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 4.3e-21 105.1 96 56.2
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 4.0e-19 98.6 96 51.0
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 1.2e-18 97.1 90 54.4
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 1.5e-18 96.7 62 72.6
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 2.6e-18 95.9 96 50.0
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 3.4e-18 95.5 92 54.3
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 3.4e-18 95.5 96 50.0
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 4.4e-18 95.1 90 51.1
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 5.8e-18 94.7 90 55.6
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 9.8e-18 94.0 63 73.0
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 1.3e-17 93.6 96 50.0
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 1.3e-17 93.6 96 50.0
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 1.7e-17 93.2 90 51.1
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 6.4e-17 91.3 70 68.6
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 6.4e-17 91.3 96 51.0
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 8.3e-17 90.9 62 69.4
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 8.3e-17 90.9 68 61.8
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 1.4e-16 90.1 96 49.0
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.4e-16 90.1 96 49.0
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 1.9e-16 89.7 90 48.9
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 3.2e-16 89.0 63 68.3
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 3.2e-16 89.0 63 68.3
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 4.1e-16 88.6 62 69.4
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 7.0e-16 87.8 96 46.9
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 9.2e-16 87.4 63 66.7
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 9.2e-16 87.4 90 51.1
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 1.2e-15 87.0 90 50.0
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 1.6e-15 86.7 66 69.7
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 2.0e-15 86.3 63 71.4
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 2.7e-15 85.9 63 69.8
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 2.7e-15 85.9 63 69.8
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 3.5e-15 85.5 64 65.6
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 6.0e-15 84.7 65 64.6
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 6.0e-15 84.7 66 63.6
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 7.8e-15 84.3 92 51.1
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.0e-14 84.0 90 45.6
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 1.0e-14 84.0 63 69.8
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 1.0e-14 84.0 62 66.1
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 1.3e-14 83.6 63 63.5
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 2.3e-14 82.8 63 68.3
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 2.3e-14 82.8 62 62.9
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 3.0e-14 82.4 69 62.3
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 3.9e-14 82.0 63 68.3
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 1.1e-13 80.5 67 65.7
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 1.1e-13 80.5 62 61.3
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 1.5e-13 80.1 97 45.4
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 1.5e-13 80.1 64 60.9
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 1.5e-13 80.1 94 46.8
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 1.5e-13 80.1 62 61.3
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 1.5e-13 80.1 92 51.1
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 3.3e-13 79.0 63 66.7
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 3.3e-13 79.0 63 65.1
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 3.3e-13 79.0 62 61.3
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 4.3e-13 78.6 91 48.4
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 4.3e-13 78.6 115 41.7
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 5.6e-13 78.2 92 45.7
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 5.6e-13 78.2 68 60.3
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 5.6e-13 78.2 68 57.4
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 9.5e-13 77.4 66 59.1
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 9.5e-13 77.4 63 61.9
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 1.2e-12 77.0 63 63.5
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.6e-12 76.6 68 55.9
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.6e-12 76.6 66 59.1
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 2.1e-12 76.3 67 61.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 2.8e-12 75.9 64 60.9
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 3.6e-12 75.5 63 61.9
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 3.6e-12 75.5 93 46.2
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 4.7e-12 75.1 79 53.2
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 8.1e-12 74.3 68 55.9
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 1.1e-11 73.9 62 58.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.8e-11 73.2 64 57.8
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 2.3e-11 72.8 92 42.4
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.0e-11 72.0 64 53.1
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 8.9e-11 70.9 63 58.7
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 1.2e-10 70.5 63 55.6
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.0e-10 69.7 64 53.1
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 4.4e-10 68.6 47 63.8
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.9e-09 65.1 64 50.0
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.3e-09 64.3 64 51.6
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.9e-08 63.2 68 47.1
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 2.4e-08 62.8 85 45.9
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.6e-07 60.1 64 43.8
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.6e-07 60.1 64 43.8
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 2.7e-07 59.3 64 46.9
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.8e-07 57.8 71 45.1


User provided reference genes

Program Settings