Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0098900 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.3e-255 885.9 461 100.0
Rhsim09G0079400 Rhododendron simsii HOM05D008917 ORTHO05D010970 6.8e-132 474.9 294 87.4
Rhsim13G0130100 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.0e-83 313.9 275 68.4
Rhsim11G0000100 Rhododendron simsii HOM05D008917 ORTHO05D010970 4.5e-67 259.6 140 98.6
Rhsim11G0000500 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.9e-66 256.9 140 97.9
Rhsim12G0100500 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.2e-64 251.5 140 96.4
Rhsim04G0148300 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.0e-58 231.9 117 97.4
Rhsim05G0131700 Rhododendron simsii HOM05D008917 ORTHO05D010970 9.5e-49 198.7 139 82.7
vmacro12506 Vaccinium macrocarpon HOM05D001282 ORTHO05D010970 7.0e-44 182.6 117 78.6
Rhsim07G0147400 Rhododendron simsii HOM05D008917 ORTHO05D010970 6.1e-40 169.5 138 73.9
Rhsim04G0148500 Rhododendron simsii HOM05D008917 ORTHO05D010970 8.0e-40 169.1 136 74.3
Rhsim07G0147900 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.0e-39 168.7 128 76.6
Rhsim04G0148200 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.5e-38 164.9 137 74.5
Rhsim07G0151000 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.5e-38 164.9 111 82.9
Actinidia25667 Actinidia chinensis HOM05D001282 ORTHO05D001236 5.6e-33 146.4 113 66.4
Dinv41681 Davidia involucrata HOM05D001282 ORTHO05D001236 2.1e-32 144.4 113 65.5
CSS0014311 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D001236 7.5e-30 136.0 113 63.7
Dinv05403 Davidia involucrata HOM05D001282 ORTHO05D001236 1.3e-29 135.2 113 64.6
Oeu030009.1 Olea europaea HOM05D001282 ORTHO05D001236 4.1e-28 130.2 113 60.2
Rhsim06G0091000 Rhododendron simsii HOM05D008917 ORTHO05D010970 7.0e-28 129.4 135 60.0
DCAR_014782 Daucus carota HOM05D001282 ORTHO05D001236 1.2e-27 128.6 113 58.4
Nitab4.5_0006501g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 1.2e-27 128.6 114 61.4
CSS0050392 Camellia sinensis var. sinensis HOM05D001282 ORTHO05D010970 4.6e-27 126.7 110 60.9
Nitab4.5_0010710g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 1.3e-26 125.2 115 60.0
Sabra13G0097500 Salix brachista HOM05D001282 ORTHO05D001236 1.7e-26 124.8 113 59.3
Hma1.2p1_0855F.1_g228995 Hydrangea macrophylla HOM05D001282 ORTHO05D001236 5.0e-26 123.2 113 61.1
CAN.G199.24 Capsicum annuum HOM05D001282 ORTHO05D001236 6.6e-26 122.9 114 58.8
Lj7P301T31 Lonicera japonica HOM05D001282 ORTHO05D010970 8.6e-26 122.5 103 60.2
Rhsim13G0127900 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.1e-25 122.1 129 59.7
Hma1.2p1_2959F.1_g330840 Hydrangea macrophylla HOM05D001282 ORTHO05D010970 2.5e-25 120.9 113 59.3
Solyc06g065460.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 4.3e-25 120.2 114 57.9
Sopen06g023950 Solanum pennellii HOM05D001282 ORTHO05D001236 4.3e-25 120.2 114 57.9
Oeu004772.5 Olea europaea HOM05D001282 ORTHO05D001236 5.6e-25 119.8 113 56.6
Peaxi162Scf00268g01314 Petunia axillaris HOM05D001282 ORTHO05D001236 7.3e-25 119.4 114 57.9
Actinidia02596 Actinidia chinensis HOM05D001282 ORTHO05D010970 1.2e-24 118.6 111 55.9
MSTRG.25430 Avicennia marina HOM05D001282 ORTHO05D001236 2.1e-24 117.9 113 59.3
GSVIVG01034887001 Vitis vinifera HOM05D001282 ORTHO05D001236 6.2e-24 116.3 114 57.9
TAR381G0652 Trochodendron aralioides HOM05D001282 ORTHO05D001236 8.1e-24 115.9 113 55.8
SalBow7G1442 Salvia bowleyana HOM05D001282 ORTHO05D001236 1.1e-23 115.5 113 54.0
COL.COLO4_05835 Corchorus olitorius HOM05D001282 ORTHO05D001236 1.4e-23 115.2 112 54.5
Rhsim08G0139900 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.3e-23 114.4 133 55.6
Potri.013G115300 Populus trichocarpa HOM05D001282 ORTHO05D001236 4.0e-23 113.6 109 56.0
Duzib177G0296 Durio zibethinus HOM05D001282 ORTHO05D001236 6.8e-23 112.8 117 55.6
Gohir.A02G061200 Gossypium hirsutum HOM05D001282 ORTHO05D001236 6.8e-23 112.8 114 52.6
Ciclev10000547m.g Citrus clementina HOM05D001282 ORTHO05D001236 1.2e-22 112.1 115 56.5
Migut.C01229 Erythranthe guttata HOM05D001282 ORTHO05D001236 1.5e-22 111.7 115 53.9
Gohir.A05G249900 Gossypium hirsutum HOM05D001282 ORTHO05D001236 2.6e-22 110.9 113 50.4
Cc00_g07180 Coffea canephora HOM05D001282 ORTHO05D001236 3.4e-22 110.5 114 52.6
Potri.019G085900 Populus trichocarpa HOM05D001282 ORTHO05D001236 3.4e-22 110.5 115 55.7
Gohir.D05G251700 Gossypium hirsutum HOM05D001282 ORTHO05D001236 4.4e-22 110.2 113 50.4
Gohir.D02G066600 Gossypium hirsutum HOM05D001282 ORTHO05D001236 7.5e-22 109.4 114 51.8
Gohir.D11G163033 Gossypium hirsutum HOM05D001282 ORTHO05D010970 1.7e-21 108.2 109 50.5
Sabra19G0096500 Salix brachista HOM05D001282 ORTHO05D001236 2.9e-21 107.5 115 53.9
Manes.18G099200 Manihot esculenta HOM05D001282 ORTHO05D001236 3.7e-21 107.1 102 60.8
Gorai.005G075500 Gossypium raimondii HOM05D001282 ORTHO05D001236 4.9e-21 106.7 114 50.9
Manes.02G190200 Manihot esculenta HOM05D001282 ORTHO05D001236 8.3e-21 105.9 103 59.2
Rhsim07G0156600 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.1e-20 105.5 133 54.1
Atru.chr13.1849 Acer truncatum HOM05D001282 ORTHO05D001236 1.4e-20 105.1 114 52.6
Nn5g27829 Nelumbo nucifera HOM05D001282 ORTHO05D001236 1.4e-20 105.1 117 51.3
Gorai.009G263100 Gossypium raimondii HOM05D001282 ORTHO05D001236 2.4e-20 104.4 113 48.7
SGA_v2.0_scaffold118G32455 Striga asiatica HOM05D001282 ORTHO05D001236 2.4e-20 104.4 106 50.9
Rhsim07G0147500 Rhododendron simsii HOM05D008917 ORTHO05D010970 4.1e-20 103.6 77 74.0
Thecc.08G200600 Theobroma cacao HOM05D001282 ORTHO05D001236 4.1e-20 103.6 112 50.0
CAN.G61.15 Capsicum annuum HOM05D001282 ORTHO05D001236 7.1e-20 102.8 114 51.8
Rhsim12G0100400 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.6e-19 101.7 135 53.3
Cfa018208 Carpinus fangiana HOM05D001282 ORTHO05D001236 2.7e-19 100.9 120 50.0
Duzib116G0685 Durio zibethinus HOM05D001282 ORTHO05D001236 3.5e-19 100.5 105 50.5
Hund27073 Selenicereus undatus HOM05D001282 ORTHO05D001236 3.5e-19 100.5 120 49.2
CiPaw.15G083300 Carya illinoinensis HOM05D001282 ORTHO05D001236 4.6e-19 100.1 120 48.3
TAR628G0098 Trochodendron aralioides HOM05D001282 ORTHO05D001236 4.6e-19 100.1 97 53.6
Nn1g08460 Nelumbo nucifera HOM05D001282 ORTHO05D001236 6.0e-19 99.8 133 46.6
Rhsim02G0149900 Rhododendron simsii HOM05D008917 ORTHO05D010970 6.0e-19 99.8 136 52.9
Hund16807 Selenicereus undatus HOM05D001282 ORTHO05D001236 7.8e-19 99.4 120 48.3
PSO782G4055 Papaver somniferum HOM05D001282 ORTHO05D001236 1.0e-18 99.0 133 41.4
Sopen11g009000 Solanum pennellii HOM05D001282 ORTHO05D001236 1.0e-18 99.0 114 49.1
PSO170G2937 Papaver somniferum HOM05D001282 ORTHO05D001236 6.6e-18 96.3 133 39.8
Solyc11g017000.2 Solanum lycopersicum HOM05D001282 ORTHO05D001236 6.6e-18 96.3 114 48.2
Lsat_1_v5_gn_1_8340 Lactuca sativa HOM05D001282 ORTHO05D001236 1.5e-17 95.1 109 49.5
Rhsim03G0132100 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.9e-17 94.7 107 57.9
TWI32G0875 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 1.9e-17 94.7 110 51.8
Haze_17898 Corylus avellana HOM05D001282 ORTHO05D001236 3.3e-17 94.0 120 47.5
TWI34G0755 Tripterygium wilfordii HOM05D001282 ORTHO05D001236 3.3e-17 94.0 148 39.9
ECA247G3423 Erigeron canadensis HOM05D001282 ORTHO05D001236 5.6e-17 93.2 121 47.9
Sc01g0001670 Simmondsia chinensis HOM05D001282 ORTHO05D001236 5.6e-17 93.2 121 50.4
QL02p034232 Quercus lobata HOM05D001282 ORTHO05D001236 9.5e-17 92.4 110 49.1
Rhsim02G0149300 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.2e-16 92.0 107 56.1
PGR042G1721 Punica granatum HOM05D001282 ORTHO05D001236 2.1e-16 91.3 115 52.2
Rhsim01G0146600 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.1e-16 91.3 107 55.1
Rhsim11G0000400 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.8e-16 90.9 104 56.7
Prupe.8G052300 Prunus persica HOM05D001282 ORTHO05D001236 3.6e-16 90.5 125 45.6
ClCG09G010390 Citrullus lanatus HOM05D001282 ORTHO05D001236 1.4e-15 88.6 119 52.1
Nitab4.5_0000159g0080 Nicotiana tabacum HOM05D001282 ORTHO05D001236 1.8e-15 88.2 112 49.1
CARHR033780 Cardamine hirsuta HOM05D001282 ORTHO05D001236 3.1e-15 87.4 116 46.6
Thhalv10007023m.g Eutrema salsugineum HOM05D001282 ORTHO05D001236 4.0e-15 87.0 113 46.9
BcaC08g43785 Brassica carinata HOM05D001282 ORTHO05D001236 6.8e-15 86.3 118 45.8
C06p11670 Brassica napus HOM05D001282 ORTHO05D001236 6.8e-15 86.3 118 45.8
BolC6t36297H Brassica oleracea HOM05D001282 ORTHO05D001236 6.8e-15 86.3 118 45.8
Rhsim12G0101600 Rhododendron simsii HOM05D008917 ORTHO05D010970 6.8e-15 86.3 104 55.8
Aqoxy6G00140 Aquilegia oxysepala HOM05D001282 ORTHO05D001236 8.9e-15 85.9 113 45.1
Nitab4.5_0000531g0020 Nicotiana tabacum HOM05D001282 ORTHO05D001236 8.9e-15 85.9 114 47.4
MBI17_g06060_MAGBIO Magnolia biondii HOM05D001282 ORTHO05D001236 1.2e-14 85.5 111 47.7
Sed0014195 Sechium edule HOM05D001282 ORTHO05D001236 1.5e-14 85.1 120 47.5
Ah.05g177830 Amaranthus hybridus HOM05D001282 ORTHO05D001236 2.0e-14 84.7 120 42.5
Rhsim07G0148700 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.6e-14 84.3 115 53.0
EL10Ac1g00063 Beta vulgaris HOM05D001282 ORTHO05D001236 3.4e-14 84.0 111 46.8
MBI17_g42326_MAGBIO Magnolia biondii HOM05D001282 ORTHO05D010970 3.4e-14 84.0 105 48.6
AUR62023586 Chenopodium quinoa HOM05D001282 ORTHO05D001236 4.4e-14 83.6 120 43.3
MD05G1039900 Malus domestica HOM05D001282 ORTHO05D001236 4.4e-14 83.6 116 44.8
BcaB07g33134 Brassica carinata HOM05D001282 ORTHO05D001236 5.8e-14 83.2 116 44.8
SGA_v2.0_scaffold24G10530 Striga asiatica HOM05D001282 ORTHO05D001236 5.8e-14 83.2 104 48.1
MELO3C023672.2 Cucumis melo HOM05D001282 ORTHO05D001236 7.6e-14 82.8 119 47.9
THA.LOC104806780 Tarenaya hassleriana HOM05D001282 ORTHO05D001236 7.6e-14 82.8 98 46.9
CsaV3_7G024220 Cucumis sativus L. HOM05D001282 ORTHO05D001236 9.9e-14 82.4 119 48.7
CANSAT25G2305 Cannabis sativa HOM05D001282 ORTHO05D001236 1.3e-13 82.0 123 41.5
Aa31LG6G8400 Aethionema arabicum HOM05D001282 ORTHO05D001236 2.2e-13 81.3 113 42.5
Rhsim07G0148000 Rhododendron simsii HOM05D008917 ORTHO05D338692 2.9e-13 80.9 126 48.4
Rhsim11G0000800 Rhododendron simsii HOM05D008917 ORTHO05D010970 3.8e-13 80.5 135 45.2
arahy.Tifrunner.gnm1.ann1.AMY8LP Arachis hypogaea HOM05D001282 ORTHO05D001236 8.4e-13 79.3 126 45.2
Rhsim04G0148400 Rhododendron simsii HOM05D008917 ORTHO05D010970 8.4e-13 79.3 102 54.9
Carub.0001s3246 Capsella rubella HOM05D001282 ORTHO05D001236 1.4e-12 78.6 114 44.7
arahy.Tifrunner.gnm1.ann1.SUJ24G Arachis hypogaea HOM05D001282 ORTHO05D001236 1.9e-12 78.2 126 45.2
AL1G48870 Arabidopsis lyrata HOM05D001282 ORTHO05D001236 2.4e-12 77.8 118 44.9
Ca_10627_v3 Cicer arietinum L. HOM05D001282 ORTHO05D001236 2.4e-12 77.8 116 42.2
MD10G1045400 Malus domestica HOM05D001282 ORTHO05D001236 4.1e-12 77.0 111 43.2
Eucgr.F02632 Eucalyptus grandis HOM05D001282 ORTHO05D001236 5.4e-12 76.6 113 45.1
TAR624G0793 Trochodendron aralioides HOM05D001282 ORTHO05D001236 5.4e-12 76.6 59 66.1
AT1G34320 Arabidopsis thaliana HOM05D001282 ORTHO05D001236 9.2e-12 75.9 120 40.8
Lj5g0007456 Lotus japonicus HOM05D001282 ORTHO05D001236 2.7e-11 74.3 117 43.6
Sed0011272 Sechium edule HOM05D001282 ORTHO05D001236 4.6e-11 73.6 120 44.2
FAN24G3448 Fragaria x ananassa HOM05D001282 ORTHO05D001236 6.0e-11 73.2 111 43.2
MD12G1057900 Malus domestica HOM05D001282 ORTHO05D001236 6.0e-11 73.2 111 40.5
FvH4_2g12350 Fragaria vesca HOM05D001282 ORTHO05D001236 7.8e-11 72.8 111 43.2
FAN20G0193 Fragaria x ananassa HOM05D001282 ORTHO05D001236 7.8e-11 72.8 111 43.2
HanXRQChr08g0217701 Helianthus annuus HOM05D001282 ORTHO05D001236 7.8e-11 72.8 100 44.0
TPR.G15711 Trifolium pratense HOM05D001282 ORTHO05D001236 1.7e-10 71.6 109 43.1
DCAR_010069 Daucus carota HOM05D001282 ORTHO05D001236 5.1e-10 70.1 114 39.5
Rhsim04G0148600 Rhododendron simsii HOM05D008917 ORTHO05D010970 5.1e-10 70.1 107 48.6
BcaB04g17885 Brassica carinata HOM05D001282 ORTHO05D001236 8.7e-10 69.3 115 40.0
Rhsim01G0002500 Rhododendron simsii HOM05D001282 ORTHO05D001236 1.1e-09 68.9 138 38.4
RcHm_v2.0_Chr6g0272361 Rosa chinensis HOM05D001282 ORTHO05D001236 1.5e-09 68.6 121 41.3
HanXRQChr04g0111621 Helianthus annuus HOM05D001282 ORTHO05D001236 2.5e-09 67.8 122 42.6
VMungo0720G0238 Vigna mungo HOM05D001282 ORTHO05D001236 3.3e-09 67.4 125 38.4
CiPaw.16G062800 Carya illinoinensis HOM05D001282 ORTHO05D001236 4.3e-09 67.0 64 57.8
Glyma.20G174000 Glycine max HOM05D001282 ORTHO05D001236 5.6e-09 66.6 122 41.8
Medtr1g096980 Medicago truncatula HOM05D001282 ORTHO05D010970 5.6e-09 66.6 108 38.9
Rhsim07G0156700 Rhododendron simsii HOM05D008917 ORTHO05D010970 5.6e-09 66.6 124 46.8
Sp1g29530 Schrenkiella parvula HOM05D001282 ORTHO05D001236 5.6e-09 66.6 98 40.8
Rhsim07G0154300 Rhododendron simsii HOM05D008917 ORTHO05D010970 1.2e-08 65.5 104 45.2
Rhsim06G0090500 Rhododendron simsii HOM05D008917 ORTHO05D010970 2.1e-08 64.7 103 47.6
Lalb_Chr01g0009961 Lupinus albus HOM05D001282 ORTHO05D001236 2.8e-08 64.3 120 36.7
Psat6g189400 Pisum sativum HOM05D001282 ORTHO05D001236 3.6e-08 63.9 108 39.8
Rhsim13G0129500 Rhododendron simsii HOM05D021230 ORTHO05D339989 4.7e-08 63.5 147 40.1
ATR1134G016 Amborella trichopoda HOM05D001282 ORTHO05D001236 6.2e-08 63.2 117 41.0
Rhsim02G0150400 Rhododendron simsii HOM05D008917 ORTHO05D010970 8.1e-08 62.8 88 51.1
TAR624G1140 Trochodendron aralioides HOM05D001282 ORTHO05D001236 1.8e-07 61.6 58 55.2
Dinv23356 Davidia involucrata HOM05D001282 ORTHO05D001236 2.4e-07 61.2 119 37.8
Lalb_Chr06g0161921 Lupinus albus HOM05D001282 ORTHO05D001236 5.2e-07 60.1 124 36.3
A09p32140 Brassica napus HOM05D001282 ORTHO05D001236 6.9e-07 59.7 103 42.7
BraA09t38759Z Brassica rapa HOM05D001282 ORTHO05D001236 6.9e-07 59.7 103 42.7
Rhsim13G0130600 Rhododendron simsii HOM05D001504 ORTHO05D001394 9.0e-07 59.3 46 71.7
vmacro13138 Vaccinium macrocarpon HOM05D001282 ORTHO05D009886 1.5e-06 58.5 123 36.6
Lalb_Chr21g0305691 Lupinus albus HOM05D001282 ORTHO05D001236 2.0e-06 58.2 124 36.3
DCAR_028428 Daucus carota HOM05D001282 ORTHO05D001236 3.4e-06 57.4 110 37.3
Gorai.001G241600 Gossypium raimondii HOM05D001282 ORTHO05D001236 3.4e-06 57.4 113 35.4
Rhsim05G0116500 Rhododendron simsii HOM05D043736 ORTHO05D340193 7.6e-06 56.2 148 38.5
Actinidia01308 Actinidia chinensis HOM05D001282 ORTHO05D001236 9.9e-06 55.8 54 55.6


User provided reference genes

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