Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.4e-99 366.3 190 100.0
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 2.0e-45 186.4 161 64.6
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.4e-45 185.7 139 67.6
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 3.2e-43 179.1 186 55.9
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 3.1e-38 162.5 191 54.5
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 4.0e-38 162.2 194 52.1
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.0e-36 157.5 171 53.8
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 4.2e-35 152.1 181 51.9
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 7.1e-35 151.4 168 53.6
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 7.1e-35 151.4 199 49.2
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 2.7e-34 149.4 177 52.5
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.6e-34 148.7 159 51.6
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.0e-33 147.5 174 51.1
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.0e-33 147.5 202 48.5
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-33 146.7 176 48.9
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 3.9e-33 145.6 199 47.7
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 5.1e-33 145.2 202 46.0
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-32 143.7 199 46.7
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.5e-32 143.7 200 51.5
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.9e-32 143.3 184 50.5
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 2.5e-32 142.9 200 44.5
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 2.5e-32 142.9 197 46.2
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 3.3e-32 142.5 147 53.1
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 4.3e-32 142.1 189 45.5
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 5.7e-32 141.7 165 51.5
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.4e-32 141.4 174 48.9
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 7.4e-32 141.4 174 48.9
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.3e-31 140.6 203 46.3
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 1.6e-31 140.2 198 44.9
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 1.6e-31 140.2 197 44.2
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 1.6e-31 140.2 197 45.2
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 3.7e-31 139.0 166 47.6
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 4.8e-31 138.7 149 50.3
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.3e-31 138.3 146 52.1
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 8.2e-31 137.9 195 45.6
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.1e-30 137.5 195 49.7
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.4e-30 137.1 183 51.9
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 5.3e-30 135.2 175 47.4
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 9.0e-30 134.4 209 48.3
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 1.5e-29 133.7 124 51.6
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.5e-29 133.7 178 52.2
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 1.5e-29 133.7 200 48.5
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 2.0e-29 133.3 130 55.4
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 3.4e-29 132.5 166 46.4
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.0e-28 131.0 188 43.1
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 1.3e-28 130.6 194 43.8
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.3e-28 130.6 194 44.3
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.3e-28 130.6 173 52.6
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 5.0e-28 128.6 192 47.4
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 6.5e-28 128.3 204 41.7
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 1.4e-27 127.1 180 44.4
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-27 127.1 170 45.3
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 7.2e-27 124.8 162 48.8
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 7.2e-27 124.8 184 41.3
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.5e-26 122.5 216 45.4
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 4.6e-26 122.1 206 44.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 6.1e-26 121.7 164 45.7
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.0e-25 120.9 168 48.2
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.0e-25 120.9 175 41.7
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 2.3e-25 119.8 177 47.5
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 3.0e-25 119.4 177 48.0
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 3.9e-25 119.0 203 43.8
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 3.9e-25 119.0 180 45.0
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 5.1e-25 118.6 171 42.7
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 5.1e-25 118.6 164 45.1
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 5.1e-25 118.6 211 40.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 6.7e-25 118.2 167 47.9
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.1e-24 117.5 134 45.5
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.1e-24 117.5 204 42.6
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.1e-24 117.5 192 47.9
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.5e-24 117.1 144 49.3
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.5e-24 117.1 196 42.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 3.3e-24 115.9 182 47.3
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 5.7e-24 115.2 166 42.8
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 7.4e-24 114.8 178 43.8
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.3e-23 114.0 178 45.5
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.3e-23 114.0 161 42.2
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-23 113.6 145 43.4
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 1.6e-23 113.6 145 43.4
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.6e-23 113.6 166 39.8
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.2e-23 113.2 163 45.4
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.8e-23 112.1 161 41.6
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 6.3e-23 111.7 176 39.8
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.8e-22 110.2 159 43.4
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.4e-22 109.8 178 41.0
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 2.4e-22 109.8 198 46.0
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 3.1e-22 109.4 167 41.9
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 3.1e-22 109.4 150 43.3
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 3.1e-22 109.4 150 43.3
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 3.1e-22 109.4 150 43.3
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 3.1e-22 109.4 177 44.6
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 6.9e-22 108.2 170 47.1
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 6.9e-22 108.2 152 45.4
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 9.0e-22 107.8 158 39.9
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 1.2e-21 107.5 221 41.2
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.5e-21 107.1 144 43.8
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 2.0e-21 106.7 175 46.9
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 2.0e-21 106.7 175 46.3
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 2.0e-21 106.7 175 46.9
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 2.0e-21 106.7 159 42.8
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.0e-21 106.7 135 49.6
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.0e-21 106.7 184 41.3
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.4e-21 105.9 156 43.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.5e-21 105.5 160 43.8
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 7.7e-21 104.8 166 39.8
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 7.7e-21 104.8 139 46.0
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 7.7e-21 104.8 152 41.4
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.3e-20 104.0 161 40.4
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.7e-20 103.6 160 39.4
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-20 103.2 167 45.5
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 2.2e-20 103.2 181 40.9
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 2.9e-20 102.8 164 46.3
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 5.0e-20 102.1 163 42.9
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 5.0e-20 102.1 163 42.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 5.0e-20 102.1 151 41.1
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 1.1e-19 100.9 158 41.1
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.4e-19 100.5 183 37.7
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.9e-19 100.1 165 44.2
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 3.2e-19 99.4 195 41.0
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 3.2e-19 99.4 153 40.5
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.5e-19 98.6 181 38.7
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.6e-18 97.1 182 39.6
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.6e-18 97.1 174 43.7
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 4.6e-18 95.5 173 41.0
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 4.6e-18 95.5 166 46.4
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 3.0e-17 92.8 136 46.3
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.5e-16 90.5 153 42.5
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.7e-15 87.0 184 37.0
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 2.8e-15 86.3 151 44.4
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 4.8e-15 85.5 126 45.2
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 2.4e-14 83.2 171 33.3
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 3.1e-14 82.8 171 35.7
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 5.3e-14 82.0 140 38.6
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.7e-13 78.2 176 39.8
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 5.0e-12 75.5 173 39.3
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.4e-11 73.9 114 45.6
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.9e-11 73.6 177 39.0
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 2.5e-11 73.2 198 31.3
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.5e-11 73.2 174 40.8
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 2.7e-10 69.7 123 48.8
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.6e-10 69.3 154 33.1
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 3.9e-09 65.9 114 42.1
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 7.4e-08 61.6 191 36.6
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.3e-07 60.8 51 54.9
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.4e-06 56.6 141 35.5
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 2.4e-06 56.6 174 31.6
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 4.1e-06 55.8 120 35.0
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 4.1e-06 55.8 174 31.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 5.3e-06 55.5 143 31.5


User provided reference genes

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