Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0092100 Rhododendron simsii HOM05D000252 ORTHO05D008225 1.3e-94 349.7 181 100.0
Rhsim06G0092000 Rhododendron simsii HOM05D000252 ORTHO05D008225 1.2e-52 210.3 136 80.1
Rhsim06G0128200 Rhododendron simsii HOM05D000252 ORTHO05D008225 4.1e-40 168.7 221 48.0
vmacro21129 Vaccinium macrocarpon HOM05D000252 ORTHO05D008225 2.8e-36 156.0 187 48.7
Lj7A385T61 Lonicera japonica HOM05D000252 ORTHO05D008225 1.0e-35 154.1 230 42.6
Cc10_g15360 Coffea canephora HOM05D000252 ORTHO05D008225 6.8e-35 151.4 187 47.1
TAR381G0219 Trochodendron aralioides HOM05D000252 ORTHO05D008225 6.8e-35 151.4 199 46.2
Dinv41028 Davidia involucrata HOM05D000252 ORTHO05D008225 8.9e-35 151.0 226 41.2
Manes.18G095400 Manihot esculenta HOM05D000252 ORTHO05D008225 4.4e-34 148.7 199 46.2
Manes.18G095300 Manihot esculenta HOM05D000252 ORTHO05D008225 1.3e-33 147.1 199 45.7
Prupe.8G041900 Prunus persica HOM05D000252 ORTHO05D008225 1.3e-33 147.1 199 44.7
Peaxi162Scf00360g00617 Petunia axillaris HOM05D000252 ORTHO05D008225 1.7e-33 146.7 163 49.7
CsaV3_7G024450 Cucumis sativus L. HOM05D002084 ORTHO05D008225 2.9e-33 146.0 205 44.4
FvH4_2g12970 Fragaria vesca HOM05D000252 ORTHO05D008225 2.9e-33 146.0 199 43.7
FAN15G0190 Fragaria x ananassa HOM05D000252 ORTHO05D008225 2.9e-33 146.0 199 43.7
FAN24G1341 Fragaria x ananassa HOM05D000252 ORTHO05D008225 2.9e-33 146.0 199 43.7
FAN27G1385 Fragaria x ananassa HOM05D000252 ORTHO05D008225 3.7e-33 145.6 199 43.7
Sabra05G0150400 Salix brachista HOM05D000252 ORTHO05D008225 3.7e-33 145.6 205 43.4
Migut.C00148 Erythranthe guttata HOM05D000252 ORTHO05D008225 6.4e-33 144.8 188 45.7
MBI04_g33334_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D008225 6.4e-33 144.8 199 44.2
Lsat_1_v5_gn_1_5160 Lactuca sativa HOM05D000252 ORTHO05D008225 1.1e-32 144.1 214 42.1
Nitab4.5_0000099g0270 Nicotiana tabacum HOM05D000252 ORTHO05D008225 1.9e-32 143.3 203 43.3
Haze_17808 Corylus avellana HOM05D000252 ORTHO05D008225 2.4e-32 142.9 199 44.2
RcHm_v2.0_Chr6g0274101 Rosa chinensis HOM05D000252 ORTHO05D008225 3.2e-32 142.5 226 39.4
Thecc.08G160400 Theobroma cacao HOM05D000252 ORTHO05D008225 3.2e-32 142.5 205 43.9
Thhalv10028805m.g Eutrema salsugineum HOM05D000252 ORTHO05D008225 4.1e-32 142.1 199 44.2
SalBow7G3195 Salvia bowleyana HOM05D000252 ORTHO05D008225 4.1e-32 142.1 214 43.0
Sc02g0003800 Simmondsia chinensis HOM05D000252 ORTHO05D008225 4.1e-32 142.1 199 42.7
SGA_v2.0_scaffold133G34675 Striga asiatica HOM05D000252 ORTHO05D008225 4.1e-32 142.1 186 45.2
GSVIVG01001427001 Vitis vinifera HOM05D000252 ORTHO05D008225 5.4e-32 141.7 187 45.5
CiPaw.15G012100 Carya illinoinensis HOM05D000252 ORTHO05D008225 7.0e-32 141.4 187 44.4
Potri.005G197700 Populus trichocarpa HOM05D000252 ORTHO05D008225 7.0e-32 141.4 199 43.2
PSO170G6236 Papaver somniferum HOM05D000252 ORTHO05D008225 9.2e-32 141.0 160 50.0
AL6G43390 Arabidopsis lyrata HOM05D000252 ORTHO05D008225 1.2e-31 140.6 199 43.7
MELO3C024061.2 Cucumis melo HOM05D000252 ORTHO05D008225 1.2e-31 140.6 205 43.4
MD10G1036200 Malus domestica HOM05D000252 ORTHO05D008225 1.2e-31 140.6 199 43.7
Solyc04g072033.1 Solanum lycopersicum HOM05D000252 ORTHO05D008225 1.2e-31 140.6 204 43.6
Sopen04g028040 Solanum pennellii HOM05D000252 ORTHO05D008225 1.2e-31 140.6 204 43.6
COL.COLO4_13738 Corchorus olitorius HOM05D002713 ORTHO05D008225 1.6e-31 140.2 199 44.2
Ciclev10001743m.g Citrus clementina HOM05D000252 ORTHO05D008225 2.0e-31 139.8 205 42.0
COL.COLO4_22296 Corchorus olitorius HOM05D000252 ORTHO05D008225 2.0e-31 139.8 205 43.9
Aqoxy5G02021 Aquilegia oxysepala HOM05D000252 ORTHO05D008225 2.7e-31 139.4 199 42.7
EL10Ac1g01610 Beta vulgaris HOM05D000252 ORTHO05D008225 2.7e-31 139.4 199 43.2
THA.LOC104806768 Tarenaya hassleriana HOM05D000252 ORTHO05D008225 2.7e-31 139.4 199 43.2
Atru.chr13.1997 Acer truncatum HOM05D000252 ORTHO05D008225 3.5e-31 139.0 187 44.9
DCAR_014320 Daucus carota HOM05D000252 ORTHO05D008225 3.5e-31 139.0 199 43.2
Glyma.02G078600 Glycine max HOM05D000252 ORTHO05D008225 3.5e-31 139.0 187 42.8
Hund17493 Selenicereus undatus HOM05D000252 ORTHO05D008225 3.5e-31 139.0 204 41.2
Sp6g07750 Schrenkiella parvula HOM05D000252 ORTHO05D008225 4.6e-31 138.7 200 43.0
AT4G09750 Arabidopsis thaliana HOM05D000252 ORTHO05D008225 7.8e-31 137.9 199 42.7
CARHR260740 Cardamine hirsuta HOM05D000252 ORTHO05D008225 7.8e-31 137.9 199 43.2
BcaC04g20974 Brassica carinata HOM05D000252 ORTHO05D008225 2.3e-30 136.3 199 42.7
A09p29350 Brassica napus HOM05D000252 ORTHO05D008225 2.3e-30 136.3 199 42.7
C09p37410 Brassica napus HOM05D000252 ORTHO05D008225 2.3e-30 136.3 199 42.7
BolC9t56571H Brassica oleracea HOM05D000252 ORTHO05D008225 2.3e-30 136.3 199 42.7
BraA09t38502Z Brassica rapa HOM05D000252 ORTHO05D008225 2.3e-30 136.3 199 42.7
Carub.0006s2822 Capsella rubella HOM05D000252 ORTHO05D008225 3.0e-30 136.0 199 42.7
Lj2g0016577 Lotus japonicus HOM05D000252 ORTHO05D008225 3.0e-30 136.0 199 41.2
QL02p037260 Quercus lobata HOM05D000252 ORTHO05D008225 3.0e-30 136.0 203 41.4
TWI34G0678 Tripterygium wilfordii HOM05D000252 ORTHO05D008225 3.0e-30 136.0 199 42.7
PGSC0003DMG402025057 Solanum tuberosum HOM05D000252 ORTHO05D008225 3.9e-30 135.6 203 42.9
BcaB01g01425 Brassica carinata HOM05D000252 ORTHO05D008225 5.0e-30 135.2 199 42.2
AUR62034887 Chenopodium quinoa HOM05D000252 ORTHO05D008225 5.0e-30 135.2 199 41.7
BolC2t09362H Brassica oleracea HOM05D000252 ORTHO05D008225 6.6e-30 134.8 202 41.6
Gohir.A06G111600 Gossypium hirsutum HOM05D000252 ORTHO05D008225 6.6e-30 134.8 204 41.7
Nn1g05994 Nelumbo nucifera HOM05D000252 ORTHO05D008225 6.6e-30 134.8 187 43.3
Eucgr.F04171 Eucalyptus grandis HOM05D000252 ORTHO05D008225 8.6e-30 134.4 199 41.2
HanXRQChr05g0137651 Helianthus annuus HOM05D000252 ORTHO05D008225 8.6e-30 134.4 199 42.2
arahy.Tifrunner.gnm1.ann1.LWF4SI Arachis hypogaea HOM05D000252 ORTHO05D008225 1.1e-29 134.0 199 41.2
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.5e-29 133.7 199 41.7
Sed0027840 Sechium edule HOM05D000252 ORTHO05D008225 1.5e-29 133.7 187 43.3
arahy.Tifrunner.gnm1.ann1.NU16HH Arachis hypogaea HOM05D000252 ORTHO05D008225 1.9e-29 133.3 199 41.2
PSO210G0631 Papaver somniferum HOM05D000252 ORTHO05D008225 4.3e-29 132.1 187 43.3
Oeu046073.1 Olea europaea HOM05D000252 ORTHO05D008225 5.6e-29 131.7 177 44.6
VMungo0464G0845 Vigna mungo HOM05D000252 ORTHO05D008225 5.6e-29 131.7 187 40.6
Ca_04665_v3 Cicer arietinum L. HOM05D000252 ORTHO05D008225 7.3e-29 131.3 189 40.7
Phvul.004G089200 Phaseolus vulgaris HOM05D000252 ORTHO05D008225 1.2e-28 130.6 187 40.6
SEGI_33347 Sequoiadendron giganteum HOM05D000252 ORTHO05D008225 2.1e-28 129.8 188 41.0
ATR0322G044 Amborella trichopoda HOM05D000252 ORTHO05D008225 3.6e-28 129.0 204 39.2
MSTRG.973 Avicennia marina HOM05D000252 ORTHO05D008225 6.2e-28 128.3 177 44.1
Gohir.D06G115900 Gossypium hirsutum HOM05D000252 ORTHO05D008225 6.2e-28 128.3 204 39.7
CDE06G1125 Ceratophyllum demersum HOM05D000252 ORTHO05D008225 1.1e-27 127.5 187 41.2
PGR102G2743 Punica granatum HOM05D000252 ORTHO05D008225 1.1e-27 127.5 199 41.2
Zm00001eb386150 Zea mays HOM05D000252 ORTHO05D008225 1.1e-27 127.5 187 39.6
Cpa.g.sc26.104 Carica papaya HOM05D000252 ORTHO05D008225 1.4e-27 127.1 199 41.2
Os06g0590301 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D008225 1.4e-27 127.1 187 39.6
Lalb_Chr03g0035631 Lupinus albus HOM05D000252 ORTHO05D008225 2.3e-27 126.3 214 38.3
PSO135G0690 Papaver somniferum HOM05D000252 ORTHO05D008225 3.1e-27 125.9 187 40.6
PSO384G2237 Papaver somniferum HOM05D000252 ORTHO05D008225 4.0e-27 125.6 187 40.6
Medtr6g041980 Medicago truncatula HOM05D000252 ORTHO05D008225 1.2e-26 124.0 199 38.2
Duzib116G0862 Durio zibethinus HOM05D000252 ORTHO05D008225 4.9e-25 118.6 91 67.0
Gorai.010G133600 Gossypium raimondii HOM05D000252 ORTHO05D008225 4.9e-25 118.6 247 34.4
unitig_0.g2071 Utricularia gibba HOM05D000252 ORTHO05D008225 2.4e-24 116.3 103 61.2
Eucgr.F04169 Eucalyptus grandis HOM05D000252 ORTHO05D008225 9.2e-24 114.4 86 66.3
Sopen04g028050 Solanum pennellii HOM05D000252 ORTHO05D008225 1.6e-23 113.6 177 42.4
Gohir.D06G115950 Gossypium hirsutum HOM05D000252 ORTHO05D008225 1.3e-22 110.5 91 61.5
Eucgr.F04174 Eucalyptus grandis HOM05D000252 ORTHO05D008225 8.6e-22 107.8 71 70.4
AUR62026630 Chenopodium quinoa HOM05D000252 ORTHO05D008225 3.3e-21 105.9 237 32.9
Nitab4.5_0003770g0020 Nicotiana tabacum HOM05D000252 ORTHO05D008225 1.4e-19 100.5 60 80.0
SMO147G0257 Selaginella moellendorffii HOM05D000252 ORTHO05D008225 1.5e-18 97.1 182 33.0
AagrBONN_evm.TU.Sc2ySwM_117.1965 Anthoceros agrestis HOM05D002028 ORTHO05D002474 4.9e-17 92.0 188 30.3
Ah.05g168210 Amaranthus hybridus HOM05D000252 ORTHO05D008225 3.2e-16 89.4 170 37.6
FAN20G2468 Fragaria x ananassa HOM05D000252 ORTHO05D008225 3.2e-16 89.4 183 36.1
Mapoly0020s0012 Marchantia polymorpha HOM05D000252 ORTHO05D008225 3.5e-15 85.9 73 57.5
Pp3c12_19420 Physcomitrium patens HOM05D000252 ORTHO05D008225 6.0e-15 85.1 200 31.0
AagrBONN_evm.TU.Sc2ySwM_368.716 Anthoceros agrestis HOM05D000252 ORTHO05D008225 2.3e-14 83.2 161 33.5
Rhsim06G0091900 Rhododendron simsii HOM05D000252 ORTHO05D338599 1.2e-12 77.4 36 100.0
Duzib093G0681 Durio zibethinus HOM05D000252 ORTHO05D008225 1.6e-12 77.0 66 60.6
HPP92_021783 Vanilla planifolia HOM05D000252 ORTHO05D008225 1.4e-11 73.9 56 64.3
CAN.G1183.11 Capsicum annuum HOM05D000252 ORTHO05D008225 2.4e-11 73.2 151 33.8
CAN.G1183.12 Capsicum annuum HOM05D000252 ORTHO05D008225 8.9e-11 71.2 57 61.4
Psat0s3597g0040 Pisum sativum HOM05D000252 ORTHO05D008225 1.2e-10 70.9 147 31.3
ClCG09G010250 Citrullus lanatus HOM05D000252 ORTHO05D008225 7.6e-10 68.2 149 30.9
Cre08.g381516 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D008225 1.7e-09 67.0 64 45.3
Solyc04g072034.1 Solanum lycopersicum HOM05D000252 ORTHO05D008225 7.1e-08 61.6 142 32.4
unitig_0.g2072 Utricularia gibba HOM05D000252 ORTHO05D008225 7.1e-08 61.6 39 71.8
TPR.G30966 Trifolium pratense HOM05D000252 ORTHO05D008225 1.6e-07 60.5 39 66.7
TPR.G955 Trifolium pratense HOM05D000252 ORTHO05D008225 2.7e-07 59.7 39 66.7
QL02p037306 Quercus lobata HOM05D000252 ORTHO05D008225 1.0e-06 57.8 38 65.8
THA.LOC104816026 Tarenaya hassleriana HOM05D000252 ORTHO05D406836 2.3e-06 56.6 41 65.9
Potri.002G063601 Populus trichocarpa HOM05D000252 ORTHO05D331432 8.7e-06 54.7 31 74.2


User provided reference genes

Program Settings