Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0092000 Rhododendron simsii HOM05D000252 ORTHO05D008225 1.9e-107 392.5 197 100.0
Rhsim06G0092100 Rhododendron simsii HOM05D000252 ORTHO05D008225 6.7e-52 208.0 136 80.1
Rhsim06G0128200 Rhododendron simsii HOM05D000252 ORTHO05D008225 2.5e-30 136.3 96 76.0
vmacro21129 Vaccinium macrocarpon HOM05D000252 ORTHO05D008225 1.8e-28 130.2 73 84.9
Cc10_g15360 Coffea canephora HOM05D000252 ORTHO05D008225 2.0e-27 126.7 73 83.6
Prupe.8G041900 Prunus persica HOM05D000252 ORTHO05D008225 4.8e-26 122.1 73 80.8
Manes.18G095300 Manihot esculenta HOM05D000252 ORTHO05D008225 8.2e-26 121.3 109 56.9
Manes.18G095400 Manihot esculenta HOM05D000252 ORTHO05D008225 8.2e-26 121.3 109 56.0
TAR381G0219 Trochodendron aralioides HOM05D000252 ORTHO05D008225 8.2e-26 121.3 99 65.7
SGA_v2.0_scaffold133G34675 Striga asiatica HOM05D000252 ORTHO05D008225 1.4e-25 120.6 73 79.5
Migut.C00148 Erythranthe guttata HOM05D000252 ORTHO05D008225 2.4e-25 119.8 74 78.4
MBI04_g33334_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D008225 2.4e-25 119.8 74 78.4
CsaV3_7G024450 Cucumis sativus L. HOM05D002084 ORTHO05D008225 3.1e-25 119.4 85 71.8
Dinv41028 Davidia involucrata HOM05D000252 ORTHO05D008225 3.1e-25 119.4 73 78.1
MELO3C024061.2 Cucumis melo HOM05D000252 ORTHO05D008225 4.1e-25 119.0 85 72.9
Lj7A385T61 Lonicera japonica HOM05D000252 ORTHO05D008225 4.1e-25 119.0 73 78.1
GSVIVG01001427001 Vitis vinifera HOM05D000252 ORTHO05D008225 4.1e-25 119.0 73 80.8
Thhalv10028805m.g Eutrema salsugineum HOM05D000252 ORTHO05D008225 6.9e-25 118.2 73 76.7
Lsat_1_v5_gn_1_5160 Lactuca sativa HOM05D000252 ORTHO05D008225 9.1e-25 117.9 73 76.7
SalBow7G3195 Salvia bowleyana HOM05D000252 ORTHO05D008225 1.2e-24 117.5 105 59.0
Ciclev10001743m.g Citrus clementina HOM05D000252 ORTHO05D008225 1.5e-24 117.1 106 55.7
Thecc.08G160400 Theobroma cacao HOM05D000252 ORTHO05D008225 2.0e-24 116.7 100 60.0
DCAR_014320 Daucus carota HOM05D000252 ORTHO05D008225 2.6e-24 116.3 99 63.6
AL6G43390 Arabidopsis lyrata HOM05D000252 ORTHO05D008225 3.4e-24 115.9 73 75.3
FvH4_2g12970 Fragaria vesca HOM05D000252 ORTHO05D008225 3.4e-24 115.9 73 75.3
FAN27G1385 Fragaria x ananassa HOM05D000252 ORTHO05D008225 3.4e-24 115.9 73 75.3
Potri.005G197700 Populus trichocarpa HOM05D000252 ORTHO05D008225 3.4e-24 115.9 102 59.8
THA.LOC104806768 Tarenaya hassleriana HOM05D000252 ORTHO05D008225 3.4e-24 115.9 73 75.3
COL.COLO4_22296 Corchorus olitorius HOM05D000252 ORTHO05D008225 4.5e-24 115.5 73 78.1
Nitab4.5_0000099g0270 Nicotiana tabacum HOM05D000252 ORTHO05D008225 4.5e-24 115.5 77 70.1
Sabra05G0150400 Salix brachista HOM05D000252 ORTHO05D008225 5.9e-24 115.2 102 59.8
Aqoxy5G02021 Aquilegia oxysepala HOM05D000252 ORTHO05D008225 7.7e-24 114.8 74 74.3
BcaC04g20974 Brassica carinata HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
A09p29350 Brassica napus HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
C09p37410 Brassica napus HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
BolC2t09362H Brassica oleracea HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
BolC9t56571H Brassica oleracea HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
BraA09t38502Z Brassica rapa HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
FAN15G0190 Fragaria x ananassa HOM05D000252 ORTHO05D008225 7.7e-24 114.8 108 56.5
Sp6g07750 Schrenkiella parvula HOM05D000252 ORTHO05D008225 7.7e-24 114.8 73 74.0
CARHR260740 Cardamine hirsuta HOM05D000252 ORTHO05D008225 1.0e-23 114.4 73 75.3
Haze_17808 Corylus avellana HOM05D000252 ORTHO05D008225 1.0e-23 114.4 102 59.8
FAN24G1341 Fragaria x ananassa HOM05D000252 ORTHO05D008225 1.0e-23 114.4 104 57.7
Glyma.02G078600 Glycine max HOM05D000252 ORTHO05D008225 1.0e-23 114.4 73 74.0
Peaxi162Scf00360g00617 Petunia axillaris HOM05D000252 ORTHO05D008225 1.0e-23 114.4 79 69.6
Solyc04g072033.1 Solanum lycopersicum HOM05D000252 ORTHO05D008225 1.0e-23 114.4 73 75.3
Sopen04g028040 Solanum pennellii HOM05D000252 ORTHO05D008225 1.0e-23 114.4 73 75.3
PGSC0003DMG402025057 Solanum tuberosum HOM05D000252 ORTHO05D008225 1.0e-23 114.4 73 75.3
Sed0027840 Sechium edule HOM05D000252 ORTHO05D008225 1.3e-23 114.0 85 69.4
BcaB01g01425 Brassica carinata HOM05D000252 ORTHO05D008225 1.7e-23 113.6 73 72.6
Carub.0006s2822 Capsella rubella HOM05D000252 ORTHO05D008225 1.7e-23 113.6 73 74.0
AT4G09750 Arabidopsis thaliana HOM05D000252 ORTHO05D008225 2.2e-23 113.2 73 72.6
Duzib116G0862 Durio zibethinus HOM05D000252 ORTHO05D008225 2.9e-23 112.8 104 57.7
Nn1g05994 Nelumbo nucifera HOM05D000252 ORTHO05D008225 2.9e-23 112.8 73 76.7
unitig_0.g2071 Utricularia gibba HOM05D000252 ORTHO05D008225 2.9e-23 112.8 73 76.7
Atru.chr13.1997 Acer truncatum HOM05D000252 ORTHO05D008225 3.8e-23 112.5 73 76.7
CiPaw.15G012100 Carya illinoinensis HOM05D000252 ORTHO05D008225 3.8e-23 112.5 122 53.3
MD10G1036200 Malus domestica HOM05D000252 ORTHO05D008225 3.8e-23 112.5 73 75.3
QL02p037260 Quercus lobata HOM05D000252 ORTHO05D008225 3.8e-23 112.5 73 74.0
Sc02g0003800 Simmondsia chinensis HOM05D000252 ORTHO05D008225 3.8e-23 112.5 73 72.6
Hund17493 Selenicereus undatus HOM05D000252 ORTHO05D008225 5.0e-23 112.1 95 58.9
Ca_04665_v3 Cicer arietinum L. HOM05D000252 ORTHO05D008225 1.1e-22 110.9 75 70.7
PSO135G0690 Papaver somniferum HOM05D000252 ORTHO05D008225 1.4e-22 110.5 95 56.8
EL10Ac1g01610 Beta vulgaris HOM05D000252 ORTHO05D008225 1.9e-22 110.2 75 70.7
Eucgr.F04169 Eucalyptus grandis HOM05D000252 ORTHO05D008225 1.9e-22 110.2 73 71.2
PSO384G2237 Papaver somniferum HOM05D000252 ORTHO05D008225 2.5e-22 109.8 95 56.8
TWI34G0678 Tripterygium wilfordii HOM05D000252 ORTHO05D008225 2.5e-22 109.8 73 74.0
CDE06G1125 Ceratophyllum demersum HOM05D000252 ORTHO05D008225 3.2e-22 109.4 73 72.6
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 3.2e-22 109.4 73 72.6
Phvul.004G089200 Phaseolus vulgaris HOM05D000252 ORTHO05D008225 3.2e-22 109.4 105 54.3
VMungo0464G0845 Vigna mungo HOM05D000252 ORTHO05D008225 4.2e-22 109.0 92 58.7
Eucgr.F04171 Eucalyptus grandis HOM05D000252 ORTHO05D008225 5.5e-22 108.6 73 69.9
Lj2g0016577 Lotus japonicus HOM05D000252 ORTHO05D008225 5.5e-22 108.6 106 53.8
AUR62034887 Chenopodium quinoa HOM05D000252 ORTHO05D008225 7.2e-22 108.2 73 69.9
ATR0322G044 Amborella trichopoda HOM05D000252 ORTHO05D008225 9.4e-22 107.8 82 64.6
RcHm_v2.0_Chr6g0274101 Rosa chinensis HOM05D000252 ORTHO05D008225 9.4e-22 107.8 122 50.8
Eucgr.F04174 Eucalyptus grandis HOM05D000252 ORTHO05D008225 1.2e-21 107.5 75 66.7
HanXRQChr05g0137651 Helianthus annuus HOM05D000252 ORTHO05D008225 1.2e-21 107.5 104 55.8
Medtr6g041980 Medicago truncatula HOM05D000252 ORTHO05D008225 1.2e-21 107.5 73 69.9
PSO210G0631 Papaver somniferum HOM05D000252 ORTHO05D008225 1.2e-21 107.5 73 68.5
Gohir.A06G111600 Gossypium hirsutum HOM05D000252 ORTHO05D008225 1.6e-21 107.1 104 53.8
Gorai.010G133600 Gossypium raimondii HOM05D000252 ORTHO05D008225 1.6e-21 107.1 104 53.8
arahy.Tifrunner.gnm1.ann1.LWF4SI Arachis hypogaea HOM05D000252 ORTHO05D008225 2.7e-21 106.3 106 51.9
PSO170G6236 Papaver somniferum HOM05D000252 ORTHO05D008225 2.7e-21 106.3 73 67.1
Gohir.D06G115900 Gossypium hirsutum HOM05D000252 ORTHO05D008225 3.6e-21 105.9 71 70.4
Gohir.D06G115950 Gossypium hirsutum HOM05D000252 ORTHO05D008225 3.6e-21 105.9 71 70.4
MSTRG.973 Avicennia marina HOM05D000252 ORTHO05D008225 4.7e-21 105.5 63 81.0
arahy.Tifrunner.gnm1.ann1.NU16HH Arachis hypogaea HOM05D000252 ORTHO05D008225 6.1e-21 105.1 106 51.9
COL.COLO4_13738 Corchorus olitorius HOM05D002713 ORTHO05D008225 6.1e-21 105.1 156 42.3
Os06g0590301 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D008225 6.1e-21 105.1 73 67.1
Zm00001eb386150 Zea mays HOM05D000252 ORTHO05D008225 6.1e-21 105.1 73 67.1
Oeu046073.1 Olea europaea HOM05D000252 ORTHO05D008225 1.0e-20 104.4 63 77.8
Cpa.g.sc26.104 Carica papaya HOM05D000252 ORTHO05D008225 1.8e-20 103.6 73 69.9
SEGI_33347 Sequoiadendron giganteum HOM05D000252 ORTHO05D008225 1.8e-20 103.6 74 67.6
Lalb_Chr03g0035631 Lupinus albus HOM05D000252 ORTHO05D008225 3.0e-20 102.8 103 53.4
PGR102G2743 Punica granatum HOM05D000252 ORTHO05D008225 1.1e-19 100.9 73 65.8
Nitab4.5_0003770g0020 Nicotiana tabacum HOM05D000252 ORTHO05D008225 5.7e-19 98.6 59 79.7
Sopen04g028050 Solanum pennellii HOM05D000252 ORTHO05D008225 6.3e-18 95.1 63 76.2
AUR62026630 Chenopodium quinoa HOM05D000252 ORTHO05D008225 2.2e-15 86.7 111 44.1
SMO147G0257 Selaginella moellendorffii HOM05D000252 ORTHO05D008225 3.8e-15 85.9 99 43.4
Mapoly0020s0012 Marchantia polymorpha HOM05D000252 ORTHO05D008225 2.5e-14 83.2 72 56.9
Pp3c12_19420 Physcomitrium patens HOM05D000252 ORTHO05D008225 8.0e-13 78.2 73 49.3
Duzib093G0681 Durio zibethinus HOM05D000252 ORTHO05D008225 1.0e-12 77.8 90 51.1
Rhsim06G0091900 Rhododendron simsii HOM05D000252 ORTHO05D338599 1.4e-12 77.4 38 94.7
AagrBONN_evm.TU.Sc2ySwM_117.1965 Anthoceros agrestis HOM05D002028 ORTHO05D002474 1.8e-12 77.0 73 47.9
HPP92_021783 Vanilla planifolia HOM05D000252 ORTHO05D008225 3.3e-11 72.8 56 64.3
CAN.G1183.12 Capsicum annuum HOM05D000252 ORTHO05D008225 8.2e-10 68.2 41 75.6
Cre08.g381516 Chlamydomonas reinhardtii HOM05D000252 ORTHO05D008225 9.1e-09 64.7 63 44.4
Ah.05g168210 Amaranthus hybridus HOM05D000252 ORTHO05D008225 4.5e-08 62.4 40 72.5
FAN20G2468 Fragaria x ananassa HOM05D000252 ORTHO05D008225 2.9e-07 59.7 72 50.0
AagrBONN_evm.TU.Sc2ySwM_368.716 Anthoceros agrestis HOM05D000252 ORTHO05D008225 2.5e-06 56.6 48 47.9
THA.LOC104816026 Tarenaya hassleriana HOM05D000252 ORTHO05D406836 5.5e-06 55.5 62 50.0
CAN.G1183.11 Capsicum annuum HOM05D000252 ORTHO05D008225 9.4e-06 54.7 50 56.0


User provided reference genes

Program Settings