Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0091900 Rhododendron simsii HOM05D000252 ORTHO05D338599 2.3e-78 295.4 144 100.0
Rhsim06G0128200 Rhododendron simsii HOM05D000252 ORTHO05D008225 2.4e-14 82.8 116 47.4
Rhsim06G0092000 Rhododendron simsii HOM05D000252 ORTHO05D008225 7.6e-13 77.8 38 94.7
Rhsim06G0092100 Rhododendron simsii HOM05D000252 ORTHO05D008225 7.6e-13 77.8 36 100.0
Lj7A385T61 Lonicera japonica HOM05D000252 ORTHO05D008225 8.4e-12 74.3 115 41.7
COL.COLO4_13738 Corchorus olitorius HOM05D002713 ORTHO05D008225 3.2e-11 72.4 115 40.9
vmacro21129 Vaccinium macrocarpon HOM05D000252 ORTHO05D008225 4.2e-11 72.0 115 44.3
Eucgr.F04171 Eucalyptus grandis HOM05D000252 ORTHO05D008225 7.1e-11 71.2 115 39.1
AT4G09750 Arabidopsis thaliana HOM05D000252 ORTHO05D008225 9.3e-11 70.9 115 40.9
Gohir.D06G115900 Gossypium hirsutum HOM05D000252 ORTHO05D008225 9.3e-11 70.9 115 39.1
AL6G43390 Arabidopsis lyrata HOM05D000252 ORTHO05D008225 1.2e-10 70.5 115 40.9
CiPaw.15G012100 Carya illinoinensis HOM05D000252 ORTHO05D008225 1.2e-10 70.5 115 40.0
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.2e-10 70.5 115 41.7
Dinv41028 Davidia involucrata HOM05D000252 ORTHO05D008225 1.6e-10 70.1 115 40.0
Thhalv10028805m.g Eutrema salsugineum HOM05D000252 ORTHO05D008225 1.6e-10 70.1 115 40.9
Manes.18G095300 Manihot esculenta HOM05D000252 ORTHO05D008225 3.5e-10 68.9 115 38.3
TWI34G0678 Tripterygium wilfordii HOM05D000252 ORTHO05D008225 3.5e-10 68.9 115 40.0
Atru.chr13.1997 Acer truncatum HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 40.0
Cc10_g15360 Coffea canephora HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 37.4
FvH4_2g12970 Fragaria vesca HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 37.4
FAN24G1341 Fragaria x ananassa HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 37.4
Lsat_1_v5_gn_1_5160 Lactuca sativa HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 37.4
Oeu046073.1 Olea europaea HOM05D000252 ORTHO05D008225 4.6e-10 68.6 115 39.1
CARHR260740 Cardamine hirsuta HOM05D000252 ORTHO05D008225 6.0e-10 68.2 115 39.1
Haze_17808 Corylus avellana HOM05D000252 ORTHO05D008225 6.0e-10 68.2 115 40.9
FAN27G1385 Fragaria x ananassa HOM05D000252 ORTHO05D008225 6.0e-10 68.2 115 37.4
Sc02g0003800 Simmondsia chinensis HOM05D000252 ORTHO05D008225 6.0e-10 68.2 115 37.4
THA.LOC104806768 Tarenaya hassleriana HOM05D000252 ORTHO05D008225 6.0e-10 68.2 115 39.1
Carub.0006s2822 Capsella rubella HOM05D000252 ORTHO05D008225 7.9e-10 67.8 115 40.0
COL.COLO4_22296 Corchorus olitorius HOM05D000252 ORTHO05D008225 7.9e-10 67.8 115 38.3
Glyma.02G078600 Glycine max HOM05D000252 ORTHO05D008225 7.9e-10 67.8 115 36.5
QL02p037306 Quercus lobata HOM05D000252 ORTHO05D008225 7.9e-10 67.8 115 38.3
Sabra05G0150400 Salix brachista HOM05D000252 ORTHO05D008225 7.9e-10 67.8 115 38.3
HanXRQChr05g0137651 Helianthus annuus HOM05D000252 ORTHO05D008225 1.0e-09 67.4 115 39.1
Manes.18G095400 Manihot esculenta HOM05D000252 ORTHO05D008225 1.0e-09 67.4 115 38.3
QL02p037260 Quercus lobata HOM05D000252 ORTHO05D008225 1.0e-09 67.4 114 38.6
Nitab4.5_0000099g0270 Nicotiana tabacum HOM05D000252 ORTHO05D008225 1.8e-09 66.6 127 37.8
Solyc04g072033.1 Solanum lycopersicum HOM05D000252 ORTHO05D008225 1.8e-09 66.6 119 39.5
Sopen04g028040 Solanum pennellii HOM05D000252 ORTHO05D008225 1.8e-09 66.6 119 39.5
Ah.05g168210 Amaranthus hybridus HOM05D000252 ORTHO05D008225 2.3e-09 66.2 114 39.5
arahy.Tifrunner.gnm1.ann1.LWF4SI Arachis hypogaea HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 38.3
arahy.Tifrunner.gnm1.ann1.NU16HH Arachis hypogaea HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 38.3
A09p29350 Brassica napus HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 40.9
BraA09t38502Z Brassica rapa HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 40.9
Gohir.A06G111600 Gossypium hirsutum HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 37.4
Phvul.004G089200 Phaseolus vulgaris HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 38.3
TAR381G0219 Trochodendron aralioides HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 35.7
VMungo0464G0845 Vigna mungo HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 37.4
GSVIVG01001427001 Vitis vinifera HOM05D000252 ORTHO05D008225 2.3e-09 66.2 115 38.3
BcaB01g01425 Brassica carinata HOM05D000252 ORTHO05D008225 3.0e-09 65.9 115 40.9
CsaV3_7G024450 Cucumis sativus L. HOM05D002084 ORTHO05D008225 3.0e-09 65.9 115 36.5
MD10G1036200 Malus domestica HOM05D000252 ORTHO05D008225 3.0e-09 65.9 115 36.5
Migut.C00148 Erythranthe guttata HOM05D000252 ORTHO05D008225 3.9e-09 65.5 116 37.9
FAN20G2468 Fragaria x ananassa HOM05D000252 ORTHO05D008225 3.9e-09 65.5 112 35.7
Lalb_Chr03g0035631 Lupinus albus HOM05D000252 ORTHO05D008225 3.9e-09 65.5 115 39.1
Nn1g05994 Nelumbo nucifera HOM05D000252 ORTHO05D008225 3.9e-09 65.5 115 37.4
Sp6g07750 Schrenkiella parvula HOM05D000252 ORTHO05D008225 3.9e-09 65.5 115 40.0
Sopen04g028050 Solanum pennellii HOM05D000252 ORTHO05D008225 3.9e-09 65.5 115 38.3
PGSC0003DMG402025057 Solanum tuberosum HOM05D000252 ORTHO05D008225 3.9e-09 65.5 114 37.7
SGA_v2.0_scaffold133G34675 Striga asiatica HOM05D000252 ORTHO05D008225 3.9e-09 65.5 114 36.8
BcaC04g20974 Brassica carinata HOM05D000252 ORTHO05D008225 5.1e-09 65.1 115 40.0
C09p37410 Brassica napus HOM05D000252 ORTHO05D008225 5.1e-09 65.1 115 40.0
BolC9t56571H Brassica oleracea HOM05D000252 ORTHO05D008225 5.1e-09 65.1 115 40.0
FAN15G0190 Fragaria x ananassa HOM05D000252 ORTHO05D008225 5.1e-09 65.1 115 35.7
Prupe.8G041900 Prunus persica HOM05D000252 ORTHO05D008225 5.1e-09 65.1 115 35.7
Aqoxy5G02021 Aquilegia oxysepala HOM05D000252 ORTHO05D008225 6.7e-09 64.7 115 36.5
Solyc04g072034.1 Solanum lycopersicum HOM05D000252 ORTHO05D008225 6.7e-09 64.7 119 37.8
Lj2g0016577 Lotus japonicus HOM05D000252 ORTHO05D008225 8.7e-09 64.3 115 36.5
MBI04_g33334_MAGBIO Magnolia biondii HOM05D000252 ORTHO05D008225 8.7e-09 64.3 115 36.5
TPR.G30966 Trifolium pratense HOM05D000252 ORTHO05D008225 8.7e-09 64.3 115 35.7
MSTRG.973 Avicennia marina HOM05D000252 ORTHO05D008225 1.1e-08 63.9 115 33.9
Thecc.08G160400 Theobroma cacao HOM05D000252 ORTHO05D008225 1.1e-08 63.9 120 37.5
Potri.005G197700 Populus trichocarpa HOM05D000252 ORTHO05D008225 1.5e-08 63.5 115 35.7
PGR102G2743 Punica granatum HOM05D000252 ORTHO05D008225 1.5e-08 63.5 115 35.7
RcHm_v2.0_Chr6g0274101 Rosa chinensis HOM05D000252 ORTHO05D008225 1.9e-08 63.2 115 35.7
Zm00001eb386150 Zea mays HOM05D000252 ORTHO05D008225 1.9e-08 63.2 115 33.9
SalBow7G3195 Salvia bowleyana HOM05D000252 ORTHO05D008225 2.5e-08 62.8 115 33.9
Hund17493 Selenicereus undatus HOM05D000252 ORTHO05D008225 2.5e-08 62.8 115 34.8
CAN.G1183.11 Capsicum annuum HOM05D000252 ORTHO05D008225 3.3e-08 62.4 115 35.7
Psat0s3597g0040 Pisum sativum HOM05D000252 ORTHO05D008225 4.3e-08 62.0 115 34.8
Ciclev10001743m.g Citrus clementina HOM05D000252 ORTHO05D008225 7.4e-08 61.2 115 33.9
Cpa.g.sc26.104 Carica papaya HOM05D000252 ORTHO05D008225 9.6e-08 60.8 115 35.7
EL10Ac1g01610 Beta vulgaris HOM05D000252 ORTHO05D008225 1.3e-07 60.5 115 34.8
BolC2t09362H Brassica oleracea HOM05D000252 ORTHO05D008225 1.3e-07 60.5 118 37.3
Ca_04665_v3 Cicer arietinum L. HOM05D000252 ORTHO05D008225 1.6e-07 60.1 115 34.8
CDE06G1125 Ceratophyllum demersum HOM05D000252 ORTHO05D008225 2.8e-07 59.3 115 36.5
Os06g0590301 Oryza sativa ssp. japonica HOM05D000252 ORTHO05D008225 2.8e-07 59.3 115 32.2
ATR0322G044 Amborella trichopoda HOM05D000252 ORTHO05D008225 3.7e-07 58.9 115 33.9
AUR62034887 Chenopodium quinoa HOM05D000252 ORTHO05D008225 3.7e-07 58.9 115 33.9
Gorai.010G133600 Gossypium raimondii HOM05D000252 ORTHO05D008225 3.7e-07 58.9 158 31.6
ClCG09G010250 Citrullus lanatus HOM05D000252 ORTHO05D008225 4.8e-07 58.5 117 31.6
PSO210G0631 Papaver somniferum HOM05D000252 ORTHO05D008225 6.2e-07 58.2 115 34.8
MELO3C024061.2 Cucumis melo HOM05D000252 ORTHO05D008225 8.1e-07 57.8 115 33.9
SEGI_33347 Sequoiadendron giganteum HOM05D000252 ORTHO05D008225 1.1e-06 57.4 115 31.3
Medtr6g041980 Medicago truncatula HOM05D000252 ORTHO05D008225 3.1e-06 55.8 115 33.0
Sed0027840 Sechium edule HOM05D000252 ORTHO05D008225 4.0e-06 55.5 115 33.9
DCAR_014320 Daucus carota HOM05D000252 ORTHO05D008225 6.9e-06 54.7 115 33.9


User provided reference genes

Program Settings