Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 7.6e-166 587.8 487 100.0
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 4.6e-94 349.4 487 80.1
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 4.2e-71 273.1 487 48.5
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 1.4e-66 258.1 482 70.1
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.4e-66 258.1 487 49.3
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 1.3e-59 235.0 491 61.1
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 1.8e-58 231.1 487 64.9
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 2.0e-57 227.6 487 62.4
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 1.1e-55 221.9 488 63.9
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 9.3e-55 218.8 490 63.7
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 2.7e-54 217.2 488 60.9
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 2.7e-54 217.2 344 77.3
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 4.6e-54 216.5 486 63.4
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 2.3e-53 214.2 491 59.3
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.1e-53 213.0 344 50.9
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 5.1e-53 213.0 488 59.0
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.7e-53 212.6 341 76.8
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 1.1e-52 211.8 487 57.3
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 5.7e-52 209.5 351 74.4
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.3e-51 208.4 487 61.8
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 1.1e-50 205.3 488 62.5
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 2.4e-50 204.1 491 42.2
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 3.1e-50 203.8 339 47.8
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 4.1e-50 203.4 340 81.5
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 6.9e-50 202.6 489 51.1
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 2.0e-49 201.1 481 58.4
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 2.0e-49 201.1 340 83.8
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 2.6e-49 200.7 481 58.4
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 4.5e-49 199.9 490 56.1
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 4.5e-49 199.9 488 35.0
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 4.5e-49 199.9 481 58.2
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 7.6e-49 199.1 346 78.9
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.3e-48 198.4 342 49.1
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.3e-48 198.4 496 51.8
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 1.7e-48 198.0 478 59.4
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-48 198.0 478 59.4
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.7e-48 198.0 478 59.4
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.7e-48 198.0 351 80.3
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 3.8e-48 196.8 481 58.0
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 3.8e-48 196.8 491 47.9
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 6.5e-48 196.1 342 49.4
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 8.5e-48 195.7 338 53.3
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 8.5e-48 195.7 487 57.5
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.9e-47 194.5 344 81.1
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.2e-47 193.4 341 76.0
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 4.2e-47 193.4 338 60.7
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 7.2e-47 192.6 341 76.2
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 9.3e-47 192.2 344 82.3
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 7.9e-46 189.1 341 77.1
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 1.8e-45 188.0 355 69.3
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.8e-45 188.0 344 81.7
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 2.3e-45 187.6 344 64.8
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 2.3e-45 187.6 343 68.8
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 2.3e-45 187.6 343 68.8
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.0e-45 187.2 338 55.0
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 3.9e-45 186.8 489 53.8
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 3.9e-45 186.8 342 70.8
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 6.7e-45 186.0 488 56.4
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 8.8e-45 185.7 493 54.4
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 1.1e-44 185.3 488 56.8
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 1.5e-44 184.9 344 42.2
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.9e-44 184.5 342 69.6
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.9e-44 184.5 338 74.9
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 4.3e-44 183.3 343 63.6
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 4.3e-44 183.3 354 71.2
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 7.4e-44 182.6 348 66.4
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 7.4e-44 182.6 343 68.5
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 9.7e-44 182.2 489 59.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 4.8e-43 179.9 343 65.9
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 4.8e-43 179.9 489 54.0
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.4e-42 178.3 341 40.2
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.8e-42 177.9 351 67.0
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 2.4e-42 177.6 341 39.9
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 5.3e-42 176.4 489 56.9
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 6.9e-42 176.0 499 40.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 9.1e-42 175.6 499 47.7
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.5e-41 174.9 512 49.2
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.5e-41 174.9 342 34.8
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 2.6e-41 174.1 476 39.7
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 7.7e-41 172.6 348 63.8
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.0e-40 172.2 495 59.4
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.0e-40 172.2 341 72.1
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 1.3e-40 171.8 344 68.6
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 1.7e-40 171.4 482 52.5
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.7e-40 171.4 513 36.3
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.2e-40 171.0 342 40.4
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 2.9e-40 170.6 513 47.2
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 3.8e-40 170.2 490 51.8
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 6.5e-40 169.5 344 71.8
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 6.5e-40 169.5 341 72.4
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 6.5e-40 169.5 341 72.7
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.1e-39 168.7 336 34.5
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 1.1e-39 168.7 344 78.5
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 4.2e-39 166.8 491 59.9
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 4.2e-39 166.8 525 51.6
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 5.5e-39 166.4 353 60.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 7.2e-39 166.0 475 34.5
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 1.2e-38 165.2 344 39.8
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.1e-38 164.5 485 53.0
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.7e-38 164.1 344 39.5
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 3.6e-38 163.7 342 67.5
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 3.6e-38 163.7 344 78.5
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 6.1e-38 162.9 342 66.7
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.0e-37 162.2 347 32.9
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.4e-37 161.8 344 44.8
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.0e-36 157.9 342 41.8
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.0e-36 157.9 342 41.5
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 4.4e-36 156.8 342 57.3
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 5.7e-36 156.4 342 53.8
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 2.8e-35 154.1 350 38.0
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 3.7e-35 153.7 339 38.3
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 4.8e-35 153.3 351 46.2
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 3.4e-33 147.1 404 58.2
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 5.9e-33 146.4 337 40.1
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 1.7e-32 144.8 344 68.9
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.2e-32 144.4 348 38.5
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 2.9e-32 144.1 337 62.0
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 2.9e-32 144.1 337 68.5
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 6.5e-32 142.9 348 65.8
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.1e-31 142.1 341 36.4
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.0e-29 135.6 353 34.3
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 1.0e-29 135.6 486 49.8
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 1.8e-29 134.8 351 35.3
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 5.2e-29 133.3 429 60.6
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 8.8e-29 132.5 478 53.8
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.3e-27 126.3 266 58.6
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.8e-26 124.8 181 39.8
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 3.1e-26 124.0 323 29.7
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 5.3e-26 123.2 379 60.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.5e-25 120.6 202 39.1
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 3.8e-24 117.1 479 50.1
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 6.5e-24 116.3 124 49.2
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.1e-23 115.5 453 27.8
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.5e-23 115.2 374 59.6
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 1.5e-23 115.2 567 44.4
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.0e-21 109.0 360 40.3
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 1.8e-21 108.2 335 63.0
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.5e-20 105.1 483 23.4
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.3e-20 104.0 195 33.3
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 5.7e-20 103.2 201 31.8
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 9.7e-20 102.4 201 30.8
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 9.7e-20 102.4 120 45.8
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.7e-19 100.5 192 33.9
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 8.2e-19 99.4 351 25.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 4.1e-18 97.1 341 61.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 9.1e-18 95.9 337 32.0
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 9.1e-18 95.9 233 30.9
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 1.6e-17 95.1 383 53.3
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.0e-17 94.7 65 66.2
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 1.0e-16 92.4 204 32.4
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.7e-16 91.7 359 24.5
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.7e-16 91.7 58 74.1
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 5.0e-16 90.1 66 65.2
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.5e-15 88.6 113 40.7
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 1.9e-15 88.2 58 69.0
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 7.2e-15 86.3 67 65.7
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 1.4e-13 82.0 112 40.2
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 4.0e-13 80.5 52 69.2
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 5.2e-13 80.1 107 39.3
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.0e-12 78.2 177 37.3
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 4.4e-12 77.0 105 41.0
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 2.2e-11 74.7 49 69.4
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.8e-11 74.3 42 71.4
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 1.4e-10 72.0 120 47.5
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.1e-10 70.9 338 36.4
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 7.7e-09 66.2 124 29.0
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 1.3e-08 65.5 45 68.9
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 3.8e-08 63.9 39 74.4
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 3.3e-07 60.8 30 80.0


User provided reference genes

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