Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0087100 Rhododendron simsii HOM05D007007 ORTHO05D008335 3.1e-210 734.9 389 100.0
CSS0021349 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 3.0e-104 382.9 395 58.0
vmacro21211 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 6.0e-89 332.0 315 63.8
Cpa.g.sc49.113 Carica papaya HOM05D007007 ORTHO05D008335 1.8e-88 330.5 392 52.6
Prupe.1G508000 Prunus persica HOM05D007007 ORTHO05D008335 1.1e-87 327.8 386 50.8
Dinv13068 Davidia involucrata HOM05D007007 ORTHO05D008335 3.3e-87 326.2 388 52.3
Lj4A109T45 Lonicera japonica HOM05D007007 ORTHO05D008335 5.7e-87 325.5 396 51.3
RcHm_v2.0_Chr7g0240411 Rosa chinensis HOM05D007007 ORTHO05D008335 5.3e-85 318.9 386 50.3
MD08G1174100 Malus domestica HOM05D007007 ORTHO05D008335 6.9e-85 318.5 387 49.1
Ciclev10002163m.g Citrus clementina HOM05D007007 ORTHO05D008335 5.8e-84 315.5 384 50.0
MD15G1360500 Malus domestica HOM05D007007 ORTHO05D008335 1.3e-83 314.3 387 50.1
FAN18G4539 Fragaria x ananassa HOM05D000382 ORTHO05D008335 1.7e-83 313.9 389 50.4
FvH4_5g38391 Fragaria vesca HOM05D007007 ORTHO05D008335 2.9e-83 313.2 389 50.1
FAN04G0256 Fragaria x ananassa HOM05D007007 ORTHO05D008335 5.0e-83 312.4 389 50.1
TAR381G0384 Trochodendron aralioides HOM05D007007 ORTHO05D008335 5.0e-83 312.4 395 49.4
THA.LOC104800169 Tarenaya hassleriana HOM05D007007 ORTHO05D008335 6.5e-83 312.0 387 50.1
PGSC0003DMG400016952 Solanum tuberosum HOM05D007007 ORTHO05D008335 1.9e-82 310.5 398 48.5
Migut.N02916 Erythranthe guttata HOM05D007007 ORTHO05D008335 4.2e-82 309.3 389 48.8
Lj1g0002230 Lotus japonicus HOM05D007007 ORTHO05D008335 5.5e-82 308.9 392 49.2
GSVIVG01008959001 Vitis vinifera HOM05D007007 ORTHO05D008335 9.3e-82 308.1 393 49.1
BcaB02g07139 Brassica carinata HOM05D007007 ORTHO05D008335 1.2e-81 307.8 391 49.9
Nn1g05208 Nelumbo nucifera HOM05D007007 ORTHO05D008335 1.2e-81 307.8 388 49.0
Thecc.08G115100 Theobroma cacao HOM05D007007 ORTHO05D008335 3.5e-81 306.2 397 49.1
Sp5g33080 Schrenkiella parvula HOM05D007007 ORTHO05D008335 4.6e-81 305.8 391 49.6
MSTRG.24958 Avicennia marina HOM05D007007 ORTHO05D008335 6.1e-81 305.4 399 48.9
AT1G77930 Arabidopsis thaliana HOM05D007007 ORTHO05D008335 2.3e-80 303.5 387 49.4
Aa31LG4G8000 Aethionema arabicum HOM05D007007 ORTHO05D008335 3.0e-80 303.1 387 49.1
Gohir.A01G187200 Gossypium hirsutum HOM05D007007 ORTHO05D008335 3.9e-80 302.8 391 48.6
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 3.9e-80 302.8 391 48.3
Thhalv10018996m.g Eutrema salsugineum HOM05D007007 ORTHO05D008335 5.1e-80 302.4 388 49.5
Solyc12g056850.2 Solanum lycopersicum HOM05D007007 ORTHO05D008335 5.1e-80 302.4 398 47.7
AL2G38190 Arabidopsis lyrata HOM05D007007 ORTHO05D008335 6.7e-80 302.0 389 49.9
Sopen12g029530 Solanum pennellii HOM05D007007 ORTHO05D008335 6.7e-80 302.0 398 47.2
Gohir.D01G182500 Gossypium hirsutum HOM05D007007 ORTHO05D008335 3.3e-79 299.7 391 49.1
Potri.002G090600 Populus trichocarpa HOM05D007007 ORTHO05D008335 3.3e-79 299.7 391 50.6
HanXRQChr05g0162301 Helianthus annuus HOM05D007007 ORTHO05D008335 4.3e-79 299.3 398 48.7
Ca_25771_v3 Cicer arietinum L. HOM05D007007 ORTHO05D008335 5.7e-79 298.9 394 47.7
Nitab4.5_0006745g0010 Nicotiana tabacum HOM05D007007 ORTHO05D008335 5.7e-79 298.9 396 47.5
Gorai.002G219900 Gossypium raimondii HOM05D007007 ORTHO05D008335 7.4e-79 298.5 391 48.8
ClCG08G010830 Citrullus lanatus HOM05D007007 ORTHO05D008335 2.8e-78 296.6 392 48.5
Eucgr.F03733 Eucalyptus grandis HOM05D007007 ORTHO05D008335 2.8e-78 296.6 386 47.9
Lsat_1_v5_gn_6_101981 Lactuca sativa HOM05D007007 ORTHO05D008335 2.8e-78 296.6 400 48.2
Peaxi162Scf00160g01640 Petunia axillaris HOM05D007007 ORTHO05D008335 2.8e-78 296.6 401 48.1
arahy.Tifrunner.gnm1.ann1.PLAH4H Arachis hypogaea HOM05D007007 ORTHO05D008335 4.8e-78 295.8 386 48.2
Sed0027281 Sechium edule HOM05D007007 ORTHO05D008335 2.4e-77 293.5 395 48.1
FAN13G0083 Fragaria x ananassa HOM05D000382 ORTHO05D008335 6.9e-77 292.0 389 48.1
Nitab4.5_0000425g0200 Nicotiana tabacum HOM05D007007 ORTHO05D008335 9.0e-77 291.6 398 45.7
Aqoxy6G00506 Aquilegia oxysepala HOM05D007007 ORTHO05D008335 1.2e-76 291.2 393 46.8
CsaV3_6G035710 Cucumis sativus L. HOM05D007007 ORTHO05D008335 2.0e-76 290.4 394 48.5
PGR042G1361 Punica granatum HOM05D007007 ORTHO05D008335 2.0e-76 290.4 398 47.7
BcaC08g45443 Brassica carinata HOM05D007007 ORTHO05D008335 2.6e-76 290.0 385 48.6
Duzib041G0122 Durio zibethinus HOM05D007007 ORTHO05D008335 2.6e-76 290.0 389 48.1
Lalb_Chr08g0241781 Lupinus albus HOM05D007007 ORTHO05D008335 4.5e-76 289.3 395 46.3
MELO3C011379.2 Cucumis melo HOM05D007007 ORTHO05D008335 1.0e-75 288.1 394 48.2
EL10Ac1g01704 Beta vulgaris HOM05D007007 ORTHO05D008335 1.3e-75 287.7 390 46.7
TPR.G32949 Trifolium pratense HOM05D007007 ORTHO05D008335 2.9e-75 286.6 394 45.2
Actinidia10285 Actinidia chinensis HOM05D007007 ORTHO05D008335 3.8e-75 286.2 376 47.1
Carub.0002s2481 Capsella rubella HOM05D007007 ORTHO05D008335 3.8e-75 286.2 389 47.0
Oeu035395.1 Olea europaea HOM05D007007 ORTHO05D008335 3.8e-75 286.2 395 47.1
VMungo1309G1520 Vigna mungo HOM05D007007 ORTHO05D008335 1.4e-74 284.3 387 47.0
TWI36G1549 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 2.5e-74 283.5 387 46.5
Phvul.009G026800 Phaseolus vulgaris HOM05D007007 ORTHO05D008335 5.5e-74 282.3 391 46.5
TWI12G0615 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 1.2e-73 281.2 385 46.5
CAN.G47.18 Capsicum annuum HOM05D007007 ORTHO05D008335 2.1e-73 280.4 396 44.9
unitig_578.g16208 Utricularia gibba HOM05D007007 ORTHO05D008335 7.9e-73 278.5 391 46.8
Cc10_g06060 Coffea canephora HOM05D007007 ORTHO05D008335 1.4e-72 277.7 401 45.4
AUR62022326 Chenopodium quinoa HOM05D007007 ORTHO05D008335 3.0e-72 276.6 390 46.2
Atru.chr13.1299 Acer truncatum HOM05D007007 ORTHO05D008335 3.9e-72 276.2 385 46.5
CiPaw.06G023600 Carya illinoinensis HOM05D007007 ORTHO05D008335 3.9e-72 276.2 392 45.7
ClCG08G002650 Citrullus lanatus HOM05D007007 ORTHO05D008335 3.9e-72 276.2 404 45.8
Sc26g0002350 Simmondsia chinensis HOM05D007007 ORTHO05D008335 6.7e-72 275.4 389 46.5
PSO541G0161 Papaver somniferum HOM05D007007 ORTHO05D008335 3.3e-71 273.1 392 44.9
AUR62043509 Chenopodium quinoa HOM05D007007 ORTHO05D008335 5.7e-71 272.3 388 45.6
Ah.05g168490 Amaranthus hybridus HOM05D007007 ORTHO05D008335 2.2e-70 270.4 385 45.2
CARHR071400 Cardamine hirsuta HOM05D007007 ORTHO05D008335 3.7e-70 269.6 391 45.8
ECA246G4837 Erigeron canadensis HOM05D000382 ORTHO05D008335 6.3e-70 268.9 378 46.6
Manes.18G071800 Manihot esculenta HOM05D007007 ORTHO05D008335 4.1e-69 266.2 386 47.4
FAN08G0847 Fragaria x ananassa HOM05D000382 ORTHO05D008335 3.4e-68 263.1 386 44.3
QL12p035500 Quercus lobata HOM05D007007 ORTHO05D008335 4.5e-68 262.7 389 46.3
Medtr3g073560 Medicago truncatula HOM05D000382 ORTHO05D008335 1.0e-67 261.5 392 43.6
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 2.2e-67 260.4 319 48.6
C06p30730 Brassica napus HOM05D000382 ORTHO05D008335 8.5e-67 258.5 318 50.0
PSO675G2451 Papaver somniferum HOM05D007007 ORTHO05D008335 1.4e-66 257.7 397 43.3
Os07g0626400 Oryza sativa ssp. japonica HOM05D007007 ORTHO05D008335 1.6e-65 254.2 319 47.3
Zm00001eb327980 Zea mays HOM05D007007 ORTHO05D008335 1.6e-65 254.2 317 48.9
CANSAT01G1447 Cannabis sativa HOM05D007007 ORTHO05D008335 4.7e-65 252.7 385 44.7
A07p27780 Brassica napus HOM05D000382 ORTHO05D008335 2.3e-64 250.4 318 49.4
BraA07t30417Z Brassica rapa HOM05D000382 ORTHO05D008335 2.3e-64 250.4 318 49.4
DCAR_009583 Daucus carota HOM05D007007 ORTHO05D008335 2.3e-64 250.4 388 43.3
CiPaw.05G230900 Carya illinoinensis HOM05D007007 ORTHO05D008335 3.9e-64 249.6 391 44.0
SEGI_37339 Sequoiadendron giganteum HOM05D007007 ORTHO05D008335 8.8e-64 248.4 390 42.3
arahy.Tifrunner.gnm1.ann1.4WA5US Arachis hypogaea HOM05D000382 ORTHO05D008335 2.6e-63 246.9 273 53.1
CDE03G0075 Ceratophyllum demersum HOM05D007007 ORTHO05D008335 4.8e-62 242.7 387 41.1
Psat5g136560 Pisum sativum HOM05D007007 ORTHO05D008335 1.1e-61 241.5 275 50.9
Cfa015946 Carpinus fangiana HOM05D007007 ORTHO05D008335 1.8e-61 240.7 393 42.7
ATR0564G456 Amborella trichopoda HOM05D007007 ORTHO05D008335 1.0e-59 235.0 179 67.6
Haze_00544 Corylus avellana HOM05D007007 ORTHO05D008335 1.0e-59 235.0 400 42.0
arahy.Tifrunner.gnm1.ann1.J1JBQA Arachis hypogaea HOM05D007007 ORTHO05D008335 2.9e-59 233.4 310 47.4
Glyma.04G254700 Glycine max HOM05D007007 ORTHO05D008335 4.4e-55 219.5 181 65.2
Dinv44721 Davidia involucrata HOM05D007007 ORTHO05D008335 2.4e-53 213.8 267 49.1
Actinidia15631 Actinidia chinensis HOM05D007007 ORTHO05D008335 3.1e-53 213.4 295 45.8
Hund26658 Selenicereus undatus HOM05D007007 ORTHO05D008335 4.1e-53 213.0 385 39.7
Mapoly0002s0118 Marchantia polymorpha HOM05D007007 ORTHO05D008335 1.7e-51 207.6 317 41.0
Glyma.06G107400 Glycine max HOM05D007007 ORTHO05D008335 1.1e-50 204.9 181 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1161 Anthoceros agrestis HOM05D007007 ORTHO05D008335 7.2e-50 202.2 312 41.0
HanXRQChr14g0427051 Helianthus annuus HOM05D007007 ORTHO05D008335 1.8e-48 197.6 157 65.0
Pp3c4_24430 Physcomitrium patens HOM05D007007 ORTHO05D008335 1.3e-46 191.4 353 38.0
SMO367G0886 Selaginella moellendorffii HOM05D007007 ORTHO05D008335 2.8e-46 190.3 360 36.7
TAR628G0829 Trochodendron aralioides HOM05D000382 ORTHO05D000391 1.2e-39 168.3 221 47.1
CSS0030134 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 6.6e-35 152.5 109 75.2
Hma1.2p1_1060F.1_g253190 Hydrangea macrophylla HOM05D007007 ORTHO05D008335 1.3e-30 138.3 110 67.3
vmacro21212 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 9.2e-29 132.1 114 68.4
Actinidia26526 Actinidia chinensis HOM05D007007 ORTHO05D008335 1.5e-23 114.8 67 82.1
CSS0009195 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 2.7e-20 104.0 151 43.0
Zm00001eb225930 Zea mays HOM05D007007 ORTHO05D008335 7.8e-20 102.4 92 57.6
Zm00001eb414200 Zea mays HOM05D007007 ORTHO05D008335 8.6e-19 99.0 91 57.1
CBR_g28090 Chara braunii HOM05D007007 ORTHO05D008335 3.3e-18 97.1 91 59.3


User provided reference genes

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