Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 7.7e-184 647.1 352 100.0
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.9e-106 389.4 352 66.2
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.5e-99 365.5 354 65.0
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 3.7e-93 345.9 371 56.3
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 5.3e-92 342.0 361 62.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 1.7e-90 337.0 365 61.1
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.9e-90 336.3 366 59.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 8.4e-90 334.7 376 58.8
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 5.5e-89 332.0 383 53.5
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 6.7e-87 325.1 373 52.8
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 9.6e-86 321.2 377 53.3
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 9.6e-86 321.2 376 55.6
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.6e-85 320.5 387 51.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 3.7e-85 319.3 359 54.3
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 8.2e-85 318.2 364 54.7
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.2e-85 318.2 366 55.5
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.4e-84 317.4 366 55.5
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.8e-84 317.0 362 55.5
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 6.9e-84 315.1 366 56.3
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 3.4e-83 312.8 350 53.1
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.4e-83 312.8 362 58.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 5.9e-83 312.0 365 54.0
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.7e-82 310.5 374 50.0
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.2e-82 310.1 374 50.0
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.9e-82 309.7 364 53.0
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.9e-82 309.7 361 56.5
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 3.8e-82 309.3 360 57.8
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.0e-82 308.9 374 50.0
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.5e-82 308.5 374 49.7
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.5e-82 308.5 373 49.6
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 8.4e-82 308.1 365 54.5
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 8.4e-82 308.1 364 55.5
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 1.1e-81 307.8 397 49.1
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.9e-81 307.0 382 51.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 4.2e-81 305.8 367 54.2
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 5.5e-81 305.4 359 55.2
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 1.2e-80 304.3 371 52.8
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.2e-80 304.3 365 53.7
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.1e-80 303.5 350 52.9
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 2.1e-80 303.5 375 52.0
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.3e-79 300.8 377 52.8
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 3.9e-79 299.3 379 49.6
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.1e-78 297.7 357 54.9
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 4.3e-78 295.8 369 51.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 9.7e-78 294.7 385 50.6
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.8e-77 293.1 368 53.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 4.8e-77 292.4 364 55.2
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.8e-77 292.4 367 48.2
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.3e-77 292.0 364 51.4
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 8.2e-77 291.6 364 51.4
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.1e-76 291.2 358 55.6
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 9.0e-76 288.1 375 50.7
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.1e-73 281.2 386 48.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-73 280.4 375 53.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 5.5e-73 278.9 365 50.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.2e-72 277.7 349 52.4
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.6e-72 275.8 364 48.6
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.4e-71 274.2 362 51.7
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.4e-71 274.2 354 49.4
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 1.8e-71 273.9 376 48.1
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.3e-71 273.5 364 49.2
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.3e-71 273.5 364 51.1
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 6.7e-71 271.9 363 49.6
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 6.7e-71 271.9 384 46.1
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 6.3e-69 265.4 364 49.5
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 6.3e-69 265.4 364 49.5
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 6.3e-69 265.4 364 49.5
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 2.4e-68 263.5 368 49.7
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.4e-68 263.5 375 46.1
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 9.1e-68 261.5 361 50.7
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.6e-67 260.0 290 53.8
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 6.5e-66 255.4 366 47.3
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 8.5e-66 255.0 360 46.9
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 8.5e-66 255.0 360 49.7
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-65 254.6 367 48.5
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 1.1e-65 254.6 351 49.9
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 1.4e-65 254.2 349 46.1
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 2.7e-64 250.0 382 50.3
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 4.7e-64 249.2 356 49.7
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 7.9e-64 248.4 372 46.2
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 7.9e-64 248.4 386 42.5
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 7.9e-64 248.4 387 45.0
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 3.9e-63 246.1 358 44.4
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.9e-63 246.1 299 51.2
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.9e-63 246.1 372 43.5
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 6.7e-63 245.4 365 46.6
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 6.7e-63 245.4 353 43.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 6.7e-63 245.4 363 48.5
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 8.8e-63 245.0 357 50.1
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.4e-62 242.7 352 43.8
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.7e-62 242.3 353 51.0
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.3e-61 241.1 356 48.3
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.7e-61 240.7 375 47.5
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 2.4e-60 236.9 364 43.4
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.4e-60 236.9 355 46.2
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 3.1e-60 236.5 378 46.8
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.0e-59 233.8 344 46.5
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-58 230.7 373 44.5
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.7e-58 230.7 335 49.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 6.5e-58 228.8 285 49.1
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 7.2e-57 225.3 367 45.0
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 9.4e-57 224.9 374 46.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-56 223.0 362 44.2
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 2.3e-55 220.3 374 44.9
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 8.8e-55 218.4 363 41.6
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 3.3e-54 216.5 366 44.5
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 3.3e-54 216.5 360 44.7
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 5.7e-54 215.7 364 46.4
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 2.2e-53 213.8 363 42.1
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-53 213.4 361 41.6
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 6.3e-53 212.2 363 41.9
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 8.2e-53 211.8 361 41.6
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 8.2e-53 211.8 347 44.1
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 2.4e-52 210.3 296 50.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 3.1e-52 209.9 248 50.8
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 4.1e-52 209.5 385 44.2
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 7.0e-52 208.8 361 41.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 2.9e-50 203.4 353 40.8
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.9e-49 200.7 230 56.1
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 1.9e-49 200.7 347 41.8
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 3.2e-49 199.9 356 40.4
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 5.5e-49 199.1 356 40.2
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.5e-49 199.1 362 42.5
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 1.6e-48 197.6 382 42.4
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 6.1e-48 195.7 291 46.7
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 8.0e-48 195.3 364 40.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 4.0e-47 193.0 363 42.7
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 6.8e-47 192.2 362 40.1
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 2.0e-46 190.7 202 54.5
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-46 190.3 355 39.2
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-46 190.3 355 39.2
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-46 190.3 355 39.2
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-46 189.9 381 38.3
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.4e-46 189.9 381 38.3
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.4e-46 189.9 381 38.3
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.4e-46 189.5 355 37.2
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 7.5e-46 188.7 360 40.3
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 2.2e-45 187.2 281 41.6
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-45 186.8 354 39.0
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.8e-45 186.8 371 41.5
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 6.3e-45 185.7 376 40.4
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.8e-44 184.1 379 41.4
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.1e-44 183.0 373 37.8
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 6.5e-42 175.6 343 38.5
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-41 174.9 359 39.6
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 2.7e-40 170.2 347 36.6
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 6.1e-40 169.1 343 37.9
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.1e-40 169.1 365 36.7
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 8.0e-40 168.7 328 43.6
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-39 167.9 409 35.5
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-39 167.5 428 34.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 1.3e-37 161.4 343 36.7
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 2.0e-35 154.1 354 36.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.7e-35 153.7 338 34.0
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 8.6e-34 148.7 346 35.8
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.5e-33 147.9 354 35.0
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 1.9e-33 147.5 357 35.3
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 7.3e-33 145.6 343 33.8
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.1e-32 144.1 389 34.2
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.7e-32 142.9 335 34.6
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 1.0e-31 141.7 231 40.7
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.0e-31 139.8 362 35.6
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.8e-23 114.4 179 44.7
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 1.7e-21 107.8 196 44.4
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 7.8e-19 99.0 356 34.8
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.7e-18 97.8 184 44.0
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-17 93.6 119 48.7
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 9.5e-17 92.0 357 31.9
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 1.2e-14 85.1 208 35.1
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 6.4e-13 79.3 172 33.1
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 4.6e-11 73.2 318 26.1
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 7.3e-09 65.9 341 27.0
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.2e-08 62.8 259 27.0
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 8.1e-08 62.4 303 23.8
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.1e-07 62.0 304 23.7
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.8e-07 61.2 337 25.5
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.3e-07 60.8 91 46.2
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.3e-07 60.8 322 23.9
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.0e-07 60.1 332 24.1
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 4.0e-07 60.1 334 24.9
ATR0153G003 Amborella trichopoda HOM05D003923 ORTHO05D004553 2.6e-06 57.4 48 52.1
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.6e-06 57.4 324 23.5
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 3.4e-06 57.0 95 40.0
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-06 56.6 263 27.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 9.9e-06 55.5 312 25.3
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 9.9e-06 55.5 60 51.7
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 9.9e-06 55.5 300 26.3


User provided reference genes

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