Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 0.0e+00 1751.5 1117 100.0
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 5.6e-289 998.0 951 70.2
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.4e-281 971.1 952 71.3
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 6.1e-267 924.9 963 70.3
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.3e-264 914.8 956 71.4
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.0e-235 818.1 898 64.6
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 5.0e-229 798.9 952 56.7
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 3.0e-205 719.9 947 56.6
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 8.6e-205 718.4 948 58.9
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 9.8e-201 704.9 948 59.8
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 5.4e-199 699.1 951 57.4
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 2.1e-198 697.2 949 58.0
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 6.0e-198 695.7 948 57.6
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.3e-196 689.9 945 58.1
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.3e-196 689.9 945 58.1
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 5.6e-196 689.1 952 56.7
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.2e-193 681.4 944 55.8
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 4.4e-193 679.5 953 58.7
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 8.3e-192 675.2 955 47.9
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 4.1e-191 672.9 951 47.1
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 4.1e-191 672.9 953 47.3
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 3.1e-186 656.8 948 51.5
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.4e-185 652.9 943 54.8
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.1e-183 648.3 943 52.3
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.4e-183 647.9 947 52.9
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.4e-183 647.1 1018 55.5
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 1.2e-182 644.8 946 57.5
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 7.8e-182 642.1 951 51.6
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 9.6e-180 635.2 951 51.5
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.1e-178 631.7 949 52.4
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 5.3e-178 629.4 947 54.6
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 4.4e-177 626.3 949 48.1
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 9.9e-177 625.2 954 52.6
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.3e-176 624.8 948 52.7
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 7.9e-174 615.5 948 51.7
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 2.3e-173 614.0 948 53.0
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 6.6e-173 612.5 912 47.1
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.8e-171 607.1 947 51.2
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 3.6e-171 606.7 947 51.3
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.4e-170 604.7 941 49.9
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 9.0e-170 602.1 956 47.6
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 3.4e-169 600.1 947 51.3
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 5.8e-169 599.4 948 50.1
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-168 597.4 949 49.4
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.4e-168 595.5 933 47.3
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 1.4e-167 594.7 975 50.3
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 2.1e-166 590.9 949 50.7
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 4.6e-166 589.7 950 43.3
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 1.0e-165 588.6 941 50.1
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.1e-162 578.6 951 53.2
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-162 578.6 948 49.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 7.6e-161 572.4 951 50.4
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 1.3e-160 571.6 919 45.5
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 2.9e-160 570.5 990 50.3
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.8e-160 570.1 942 55.2
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 1.9e-159 567.8 921 48.0
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 3.2e-159 567.0 956 45.8
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.2e-158 565.1 942 55.0
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.3e-157 561.6 994 47.8
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 3.3e-156 557.0 953 51.2
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 4.3e-156 556.6 954 45.4
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 7.4e-156 555.8 940 48.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 1.3e-155 555.1 961 48.6
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 2.1e-155 554.3 950 50.8
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.8e-155 553.9 949 49.5
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 2.4e-154 550.8 949 46.8
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 6.9e-154 549.3 949 49.1
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 3.8e-152 543.5 961 47.2
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.4e-151 541.6 948 45.3
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.0e-149 535.4 953 47.4
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 6.7e-149 532.7 893 47.1
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 3.7e-147 526.9 944 43.9
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.6e-145 520.8 949 47.9
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 2.2e-144 517.7 950 49.6
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-144 517.7 948 46.4
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.5e-140 504.2 941 52.5
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 2.5e-140 504.2 941 52.5
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.1e-138 498.8 952 47.1
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 5.3e-138 496.5 950 46.8
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 1.2e-137 495.4 951 53.0
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 4.5e-137 493.4 966 43.9
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 8.5e-136 489.2 736 43.3
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 9.4e-135 485.7 948 46.3
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 1.6e-134 485.0 916 46.9
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.0e-128 465.7 957 46.1
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 8.5e-128 462.6 909 44.1
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.5e-127 461.8 933 42.1
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-127 461.1 744 49.6
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 4.2e-127 460.3 892 49.8
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 5.5e-127 459.9 744 51.9
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.6e-126 458.4 947 45.1
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 6.1e-126 456.4 719 54.4
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.0e-125 455.7 832 46.2
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.2e-123 448.0 928 43.1
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 3.1e-122 444.1 947 41.5
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 5.3e-122 443.4 834 48.0
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 4.5e-121 440.3 948 46.2
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.5e-119 434.5 632 46.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 1.2e-118 432.2 956 43.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.0e-117 427.6 958 42.8
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.0e-117 427.2 962 42.7
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 4.0e-117 427.2 951 41.9
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 5.2e-117 426.8 951 41.9
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 5.2e-117 426.8 951 41.9
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 2.6e-116 424.5 607 46.1
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.3e-115 422.2 960 42.7
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.1e-114 419.1 990 39.5
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.4e-114 418.7 945 36.8
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 5.4e-114 416.8 816 44.4
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 5.5e-111 406.8 961 39.2
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 4.0e-109 400.6 618 43.9
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 4.0e-109 400.6 910 38.1
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 8.8e-109 399.4 946 41.5
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 1.5e-108 398.7 617 48.0
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.3e-107 395.6 947 42.1
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 1.1e-106 392.5 997 40.6
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 7.0e-106 389.8 947 37.8
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 1.0e-104 386.0 713 50.9
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.5e-103 379.4 621 42.5
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 6.8e-101 373.2 960 40.3
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 3.7e-99 367.5 535 43.7
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 9.2e-98 362.8 714 45.0
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 1.1e-95 355.9 463 47.7
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 4.6e-89 334.0 407 55.3
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.1e-87 329.3 555 40.4
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.8e-85 320.1 303 62.4
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.5e-84 316.6 405 71.4
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 7.1e-82 310.1 296 69.6
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.7e-80 305.4 466 42.1
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 1.3e-75 289.3 353 49.0
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 1.3e-75 289.3 353 49.0
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.4e-75 287.0 242 66.1
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 2.4e-74 285.0 543 51.9
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.5e-68 265.8 758 32.8
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 3.4e-60 238.0 725 32.1
CDE10G0427 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.8e-54 217.6 371 42.3
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 3.2e-50 204.9 243 52.3
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 4.8e-46 191.0 553 30.9
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 2.4e-45 188.7 245 53.1
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 2.4e-45 188.7 245 53.1
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.5e-44 186.0 666 31.7
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 3.4e-44 184.9 246 49.2
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.5e-39 169.5 247 46.6
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 7.4e-39 167.2 120 73.3
CAN.G1227.18 Capsicum annuum HOM05D003496 ORTHO05D003909 1.3e-38 166.4 148 64.9
Lalb_Chr10g0102391 Lupinus albus HOM05D003496 ORTHO05D003909 3.7e-38 164.9 150 67.3
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.2e-36 159.8 267 39.7
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 1.9e-34 152.5 227 47.1
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 3.2e-34 151.8 120 72.5
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.2e-34 151.4 214 43.5
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 7.9e-33 147.1 273 46.5
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 7.9e-33 147.1 273 46.5
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.9e-31 142.5 486 43.6
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 4.8e-30 137.9 156 53.2
RcHm_v2.0_Chr0c28g0500951 Rosa chinensis HOM05D003496 ORTHO05D003909 9.1e-29 133.7 146 47.9
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.5e-27 127.1 240 37.5
MSTRG.1477 Avicennia marina HOM05D003496 ORTHO05D003909 1.1e-26 126.7 94 71.3
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 1.1e-23 116.7 119 58.0
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 5.7e-23 114.4 173 45.7
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 1.3e-22 113.2 108 59.3
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 1.4e-21 109.8 185 44.9
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 9.1e-21 107.1 196 75.0
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 4.7e-17 94.7 119 52.1
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 1.4e-16 93.2 107 52.3
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 2.3e-16 92.4 131 45.8
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 2.6e-15 89.0 71 70.4
SMO230G0003 Selaginella moellendorffii HOM05D003496 ORTHO05D003909 9.7e-15 87.0 456 25.0
ECA233G3681 Erigeron canadensis HOM05D003496 ORTHO05D003909 3.7e-14 85.1 223 31.4
C06p20140 Brassica napus HOM05D000331 ORTHO05D027779 1.8e-13 82.8 68 66.2
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 2.4e-13 82.4 82 59.8
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 7.0e-13 80.9 98 52.0
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 2.0e-12 79.3 79 57.0
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 4.5e-12 78.2 592 24.2
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 2.9e-11 75.5 70 62.9
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 5.0e-11 74.7 55 72.7
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 5.0e-11 74.7 68 63.2
BolC6t37194H Brassica oleracea HOM05D013757 ORTHO05D027779 8.5e-11 73.9 55 70.9
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 8.5e-11 73.9 42 83.3
BcaC08g44544 Brassica carinata HOM05D003496 ORTHO05D003909 2.5e-10 72.4 107 48.6
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 4.2e-10 71.6 42 85.7
SEGI_27299 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 7.2e-10 70.9 524 23.3
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 8.0e-09 67.4 88 46.6
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 2.3e-08 65.9 297 34.0
Haze_22265 Corylus avellana HOM05D003496 ORTHO05D003909 5.2e-08 64.7 68 58.8
Rhsim08G0229200 Rhododendron simsii HOM05D049973 ORTHO05D003909 6.7e-08 64.3 48 68.8
TPR.G33088 Trifolium pratense HOM05D003496 ORTHO05D003909 2.8e-06 58.9 28 92.9


User provided reference genes

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