Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0081900 Rhododendron simsii HOM05D000885 ORTHO05D001238 6.3e-50 200.3 89 100.0
RhsimUnG0180300 Rhododendron simsii HOM05D000885 ORTHO05D001238 1.6e-08 62.8 42 66.7
RhsimUnG0211500 Rhododendron simsii HOM05D000885 ORTHO05D001238 1.6e-08 62.8 42 66.7
Rhsim04G0231600 Rhododendron simsii HOM05D000885 ORTHO05D001238 5.9e-08 60.8 30 90.0
QL06p011180 Quercus lobata HOM05D000885 ORTHO05D001238 3.9e-07 58.2 28 89.3
vmacro08081 Vaccinium macrocarpon HOM05D000885 ORTHO05D001238 3.9e-07 58.2 28 89.3
Cfa015471 Carpinus fangiana HOM05D000885 ORTHO05D001238 1.1e-06 56.6 28 85.7
Haze_01102 Corylus avellana HOM05D000885 ORTHO05D001238 1.1e-06 56.6 28 85.7
Cc03_g01240 Coffea canephora HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 82.1
Migut.G00113 Erythranthe guttata HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 82.1
Gohir.A02G052800 Gossypium hirsutum HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 82.1
Gohir.D02G057600 Gossypium hirsutum HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 82.1
Gorai.005G065100 Gossypium raimondii HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 82.1
Lalb_Chr20g0121061 Lupinus albus HOM05D000885 ORTHO05D001238 1.5e-06 56.2 28 85.7
AL3G17880 Arabidopsis lyrata HOM05D000885 ORTHO05D001238 1.9e-06 55.8 37 59.5
CAN.G14.5 Capsicum annuum HOM05D000885 ORTHO05D001238 1.9e-06 55.8 28 78.6
Peaxi162Scf00065g00514 Petunia axillaris HOM05D000885 ORTHO05D001238 1.9e-06 55.8 28 78.6
Actinidia14265 Actinidia chinensis HOM05D000885 ORTHO05D001238 2.5e-06 55.5 28 82.1
Duzib052G0596 Durio zibethinus HOM05D000885 ORTHO05D001238 2.5e-06 55.5 30 73.3
CiPaw.01G143100 Carya illinoinensis HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
FvH4_4g19190 Fragaria vesca HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
FAN07G0823 Fragaria x ananassa HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
FAN12G0449 Fragaria x ananassa HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
Manes.03G200800 Manihot esculenta HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
Manes.15G007500 Manihot esculenta HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
Prupe.1G126600 Prunus persica HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
Prupe.1G126700 Prunus persica HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
RcHm_v2.0_Chr4g0424171 Rosa chinensis HOM05D000885 ORTHO05D001238 3.3e-06 55.1 28 82.1
Aa31LG5G17350 Aethionema arabicum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
AT3G06760 Arabidopsis thaliana HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Carub.0003s0630 Capsella rubella HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
CARHR081380 Cardamine hirsuta HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
COL.COLO4_34682 Corchorus olitorius HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Duzib151G0920 Durio zibethinus HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Thhalv10021475m.g Eutrema salsugineum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Gohir.A09G236000 Gossypium hirsutum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Gohir.D09G236800 Gossypium hirsutum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Gorai.006G259800 Gossypium raimondii HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
MD16G1159500 Malus domestica HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 82.1
Nitab4.5_0016095g0010 Nicotiana tabacum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 75.0
Sp3g05730 Schrenkiella parvula HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Solyc01g065550.3 Solanum lycopersicum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 75.0
Solyc12g099390.2 Solanum lycopersicum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Sopen01g026940 Solanum pennellii HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 75.0
Sopen12g034060 Solanum pennellii HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
PGSC0003DMG400004625 Solanum tuberosum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
PGSC0003DMG400025626 Solanum tuberosum HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 75.0
THA.LOC104818900 Tarenaya hassleriana HOM05D000885 ORTHO05D001238 4.3e-06 54.7 28 78.6
Lsat_1_v5_gn_6_115061 Lactuca sativa HOM05D000885 ORTHO05D001238 5.6e-06 54.3 28 75.0
DCAR_023320 Daucus carota HOM05D000885 ORTHO05D001238 7.3e-06 53.9 28 78.6
FAN12G3861 Fragaria x ananassa HOM05D000885 ORTHO05D001238 7.3e-06 53.9 29 75.9
Nitab4.5_0000361g0100 Nicotiana tabacum HOM05D000885 ORTHO05D001238 7.3e-06 53.9 28 75.0
Cpa.g.sc9.106 Carica papaya HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 78.6
DCAR_002496 Daucus carota HOM05D000885 ORTHO05D001238 9.5e-06 53.5 29 75.9
Dinv10049 Davidia involucrata HOM05D000885 ORTHO05D001238 9.5e-06 53.5 27 70.4
ECA233G4388 Erigeron canadensis HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0
HanXRQChr02g0049091 Helianthus annuus HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0
HanXRQChr13g0394451 Helianthus annuus HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0
Lsat_1_v5_gn_6_19480 Lactuca sativa HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0
MD13G1160000 Malus domestica HOM05D000885 ORTHO05D001238 9.5e-06 53.5 27 81.5
Thecc.04G293800 Theobroma cacao HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0
TWI09G0617 Tripterygium wilfordii HOM05D000885 ORTHO05D001238 9.5e-06 53.5 28 75.0


User provided reference genes

Program Settings