Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0067300 Rhododendron simsii HOM05D000371 ORTHO05D339463 8.1e-88 327.0 162 100.0
Rhsim06G0063300 Rhododendron simsii HOM05D000371 ORTHO05D001484 1.5e-17 93.6 60 80.0
CSS0007797 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 4.5e-14 82.0 59 71.2
CSS0012168 Camellia sinensis var. sinensis HOM05D000371 ORTHO05D001484 4.5e-14 82.0 59 71.2
Hma1.2p1_1170F.1_g263350 Hydrangea macrophylla HOM05D000371 ORTHO05D001484 9.5e-12 74.3 59 67.8
Gohir.A05G211100 Gossypium hirsutum HOM05D000371 ORTHO05D001484 4.7e-11 72.0 59 64.4
Gorai.009G221100 Gossypium raimondii HOM05D000371 ORTHO05D001484 4.7e-11 72.0 59 64.4
Dinv39212 Davidia involucrata HOM05D000371 ORTHO05D001484 6.1e-11 71.6 53 69.8
Gohir.D05G214400 Gossypium hirsutum HOM05D000371 ORTHO05D001484 6.1e-11 71.6 59 62.7
Peaxi162Scf00081g02735 Petunia axillaris HOM05D000371 ORTHO05D001484 6.1e-11 71.6 60 68.3
Actinidia10211 Actinidia chinensis HOM05D000371 ORTHO05D001484 1.0e-10 70.9 53 67.9
Nitab4.5_0003725g0020 Nicotiana tabacum HOM05D000371 ORTHO05D001484 5.2e-10 68.6 52 71.2
Nitab4.5_0000497g0050 Nicotiana tabacum HOM05D000371 ORTHO05D001484 1.2e-09 67.4 52 69.2
Duzib093G1896 Durio zibethinus HOM05D000371 ORTHO05D001484 1.5e-09 67.0 59 61.0
Lj4A73G44 Lonicera japonica HOM05D000371 ORTHO05D001484 1.5e-09 67.0 60 61.7
COL.COLO4_28478 Corchorus olitorius HOM05D000371 ORTHO05D001484 2.0e-09 66.6 59 59.3
Nn5g30635 Nelumbo nucifera HOM05D000371 ORTHO05D001484 2.0e-09 66.6 59 59.3
Thecc.08G086100 Theobroma cacao HOM05D000371 ORTHO05D001484 2.6e-09 66.2 59 61.0
CAN.G724.43 Capsicum annuum HOM05D000371 ORTHO05D001484 5.7e-09 65.1 51 68.6
Eucgr.F02235 Eucalyptus grandis HOM05D000371 ORTHO05D001484 9.8e-09 64.3 48 70.8
Oeu053076.2 Olea europaea HOM05D000371 ORTHO05D001484 9.8e-09 64.3 60 56.7
Sopen04g031300 Solanum pennellii HOM05D000371 ORTHO05D001484 9.8e-09 64.3 51 68.6
PGSC0003DMG400010624 Solanum tuberosum HOM05D000371 ORTHO05D001484 9.8e-09 64.3 51 68.6
VMungo0647G2167 Vigna mungo HOM05D000371 ORTHO05D001484 9.8e-09 64.3 48 68.8
Glyma.14G089045 Glycine max HOM05D000371 ORTHO05D001484 1.3e-08 63.9 48 66.7
MD15G1067100 Malus domestica HOM05D000371 ORTHO05D001484 1.3e-08 63.9 52 65.4
Solyc04g077660.3 Solanum lycopersicum HOM05D000371 ORTHO05D001484 1.7e-08 63.5 51 68.6
GSVIVG01009318001 Vitis vinifera HOM05D000371 ORTHO05D001484 1.7e-08 63.5 60 58.3
Cc10_g05120 Coffea canephora HOM05D000371 ORTHO05D001484 2.2e-08 63.2 56 58.9
Prupe.1G420900 Prunus persica HOM05D000371 ORTHO05D001484 2.8e-08 62.8 52 61.5
Glyma.17G233800 Glycine max HOM05D000371 ORTHO05D001484 3.7e-08 62.4 48 66.7
arahy.Tifrunner.gnm1.ann1.LNXF08 Arachis hypogaea HOM05D000371 ORTHO05D001484 8.3e-08 61.2 59 57.6
arahy.Tifrunner.gnm1.ann1.P8MRPL Arachis hypogaea HOM05D000371 ORTHO05D001484 8.3e-08 61.2 59 57.6
Psat6g017640 Pisum sativum HOM05D000371 ORTHO05D001484 8.3e-08 61.2 59 55.9
Phvul.001G029000 Phaseolus vulgaris HOM05D000371 ORTHO05D001484 1.4e-07 60.5 48 66.7
QL12p038350 Quercus lobata HOM05D000371 ORTHO05D001484 1.4e-07 60.5 48 64.6
MSTRG.24384 Avicennia marina HOM05D000371 ORTHO05D001484 1.8e-07 60.1 60 55.0
CiPaw.08G051000 Carya illinoinensis HOM05D000371 ORTHO05D001484 1.8e-07 60.1 50 64.0
SalBow2G2341 Salvia bowleyana HOM05D000371 ORTHO05D001484 1.8e-07 60.1 84 45.2
Cfa013756 Carpinus fangiana HOM05D000371 ORTHO05D001484 2.4e-07 59.7 48 62.5
Haze_22414 Corylus avellana HOM05D000371 ORTHO05D001484 2.4e-07 59.7 48 62.5
Sabra02G0091900 Salix brachista HOM05D000371 ORTHO05D001484 2.4e-07 59.7 48 62.5
Cpa.g.sc142.50 Carica papaya HOM05D000371 ORTHO05D001484 3.1e-07 59.3 48 64.6
FvH4_2g32840 Fragaria vesca HOM05D000371 ORTHO05D001484 7.0e-07 58.2 52 57.7
FAN24G0761 Fragaria x ananassa HOM05D000371 ORTHO05D001484 7.0e-07 58.2 52 57.7
Manes.18G047900 Manihot esculenta HOM05D000371 ORTHO05D001484 7.0e-07 58.2 48 62.5
Potri.002G117200 Populus trichocarpa HOM05D000371 ORTHO05D001484 7.0e-07 58.2 48 64.6
RcHm_v2.0_Chr6g0309861 Rosa chinensis HOM05D000371 ORTHO05D001484 9.2e-07 57.8 52 57.7
THA.LOC104823680 Tarenaya hassleriana HOM05D000371 ORTHO05D001484 9.2e-07 57.8 59 55.9
TPR.G13111 Trifolium pratense HOM05D000371 ORTHO05D001484 9.2e-07 57.8 48 62.5
FAN27G2593 Fragaria x ananassa HOM05D000371 ORTHO05D001484 1.2e-06 57.4 52 57.7
Lj5g0008051 Lotus japonicus HOM05D000371 ORTHO05D001484 1.6e-06 57.0 48 64.6
Ca_13199_v3 Cicer arietinum L. HOM05D001896 ORTHO05D001862 2.7e-06 56.2 92 42.4
Lalb_Chr22g0355721 Lupinus albus HOM05D000371 ORTHO05D001484 3.5e-06 55.8 48 60.4
Medtr1g017870 Medicago truncatula HOM05D000371 ORTHO05D001484 4.5e-06 55.5 59 52.5
Sc26g0004220 Simmondsia chinensis HOM05D000371 ORTHO05D001484 4.5e-06 55.5 60 48.3
Atru.chr13.854 Acer truncatum HOM05D000371 ORTHO05D001484 5.9e-06 55.1 52 59.6
SalBow2G1141 Salvia bowleyana HOM05D000371 ORTHO05D006818 5.9e-06 55.1 89 42.7
DCAR_009871 Daucus carota HOM05D000371 ORTHO05D001484 7.7e-06 54.7 78 46.2


User provided reference genes

Program Settings