Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 6.3e-97 357.5 184 100.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.3e-69 265.0 177 79.1
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 8.1e-68 260.8 175 78.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 5.4e-64 248.1 185 74.1
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.4e-59 232.6 175 68.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.9e-57 225.7 179 67.0
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.1e-56 223.8 185 64.3
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.4e-56 223.4 179 66.5
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.2e-56 222.2 181 66.9
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 5.4e-56 221.5 179 65.9
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.1e-56 221.1 180 67.2
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 4.6e-55 218.4 179 64.8
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.3e-54 216.9 185 65.4
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.3e-54 216.9 189 63.5
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.3e-54 216.9 158 68.4
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.7e-54 216.5 160 70.6
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.7e-54 216.5 184 65.2
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.7e-54 216.5 186 64.5
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.1e-54 214.9 150 73.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.1e-54 214.9 180 63.9
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 5.1e-54 214.9 175 65.1
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 8.7e-54 214.2 175 65.7
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 8.7e-54 214.2 184 62.0
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.5e-53 213.4 179 62.6
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.9e-53 213.0 179 63.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.3e-53 211.8 178 64.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-52 210.3 180 63.3
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-52 209.9 180 62.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.8e-52 209.1 165 67.3
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.8e-52 209.1 180 62.2
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.8e-52 209.1 180 62.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.8e-52 209.1 185 62.7
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 3.6e-52 208.8 180 62.2
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 3.6e-52 208.8 153 71.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 4.8e-52 208.4 178 64.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 6.2e-52 208.0 148 70.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 8.1e-52 207.6 181 63.5
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.4e-51 206.8 178 66.3
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.8e-51 206.5 178 61.2
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.4e-51 206.1 173 63.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 4.0e-51 205.3 173 62.4
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 5.3e-51 204.9 179 60.3
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 5.3e-51 204.9 179 60.3
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 5.3e-51 204.9 188 59.0
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 9.0e-51 204.1 180 62.2
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.5e-50 203.4 173 61.8
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.5e-50 203.4 146 71.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 2.0e-50 203.0 175 61.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.0e-50 203.0 180 62.2
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 2.6e-50 202.6 156 64.7
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 3.4e-50 202.2 173 61.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 4.5e-50 201.8 149 71.1
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.9e-49 199.1 179 59.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.9e-49 199.1 175 60.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.9e-49 199.1 174 60.9
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 4.9e-49 198.4 147 68.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 8.4e-49 197.6 177 59.9
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.1e-48 197.2 154 67.5
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.1e-48 197.2 183 57.9
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.4e-48 196.8 184 59.8
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.9e-48 196.4 171 60.8
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.4e-48 196.1 172 61.0
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 4.2e-48 195.3 181 60.2
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.2e-48 195.3 171 61.4
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 5.4e-48 194.9 178 60.7
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 5.4e-48 194.9 147 67.3
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 9.3e-48 194.1 178 59.0
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.6e-47 193.4 183 58.5
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 3.5e-47 192.2 158 65.2
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.5e-47 192.2 173 60.7
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.6e-47 191.8 185 58.9
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.8e-46 189.9 182 59.3
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.3e-46 189.5 158 63.3
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 6.7e-46 188.0 153 63.4
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 3.3e-45 185.7 179 54.7
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 4.3e-45 185.3 249 47.4
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 7.4e-45 184.5 213 53.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 7.4e-45 184.5 180 59.4
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 9.6e-45 184.1 150 64.7
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.6e-44 183.3 145 63.4
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.6e-44 183.3 145 60.7
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 4.8e-44 181.8 154 57.8
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.8e-44 181.8 169 58.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 6.2e-44 181.4 167 55.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.2e-44 181.4 168 57.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.1e-43 180.6 173 56.1
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-43 180.3 167 55.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.8e-43 179.9 177 54.8
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.8e-43 179.9 152 58.6
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 2.4e-43 179.5 167 55.7
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.4e-43 179.5 167 55.7
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 4.0e-43 178.7 180 52.2
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 5.3e-43 178.3 153 56.9
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 9.0e-43 177.6 184 50.5
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.2e-42 177.2 175 56.0
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-42 177.2 145 59.3
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.2e-42 177.2 145 59.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.0e-42 176.4 184 50.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 171 57.9
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.2e-41 172.9 173 56.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 2.9e-41 172.6 238 46.2
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 3.8e-41 172.2 286 41.6
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 4.9e-41 171.8 118 70.3
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 6.5e-41 171.4 122 70.5
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.1e-40 170.6 121 71.9
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.2e-40 169.1 157 61.1
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.2e-40 168.7 166 51.8
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 4.2e-40 168.7 277 41.9
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.7e-39 166.0 134 63.4
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.7e-39 166.0 157 56.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.8e-38 163.3 181 55.2
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.7e-38 161.4 155 58.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 8.7e-38 161.0 120 68.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 5.7e-37 158.3 139 55.4
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 7.4e-37 157.9 139 56.8
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 4.5e-34 148.7 155 52.9
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.0e-33 147.5 115 66.1
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 4.6e-31 138.7 124 52.4
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.0e-30 137.5 117 55.6
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.8e-30 136.7 149 47.7
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.8e-30 136.7 149 47.7
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 6.7e-30 134.8 159 45.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 5.7e-29 131.7 182 47.8
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 9.7e-29 131.0 149 47.0
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 3.1e-27 125.9 153 47.1
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 4.1e-27 125.6 129 54.3
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 4.1e-27 125.6 129 54.3
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.1e-27 125.6 100 64.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.0e-26 123.2 117 61.5
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.9e-24 116.7 133 44.4
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 5.5e-24 115.2 211 36.5
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 5.3e-19 98.6 103 48.5
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.4e-18 95.9 168 36.3
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 8.5e-17 91.3 90 55.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.1e-16 90.9 121 47.9
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.7e-12 75.9 102 42.2
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-11 74.3 101 42.6
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.8e-11 73.6 101 43.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-11 72.4 88 45.5
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 2.6e-10 69.7 101 40.6
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-09 67.4 97 41.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-09 67.4 97 41.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 2.9e-09 66.2 48 66.7
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.5e-08 63.2 41 70.7
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 7.2e-08 61.6 44 65.9


User provided reference genes

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