Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0049100 Rhododendron simsii HOM05D000955 ORTHO05D001429 5.3e-36 154.1 92 100.0
Rhsim06G0048800 Rhododendron simsii HOM05D000955 ORTHO05D003340 8.5e-26 120.2 79 91.1
Rhsim06G0049200 Rhododendron simsii HOM05D000955 ORTHO05D001429 2.5e-25 118.6 60 93.3
vmacro21527 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 3.1e-20 101.7 60 83.3
CSS0002475 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.6e-19 99.4 80 80.0
vmacro21528 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.6e-19 99.4 60 81.7
Actinidia22622 Actinidia chinensis HOM05D000955 ORTHO05D001429 2.7e-19 98.6 80 70.0
CSS0002643 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.3e-18 96.3 80 77.5
Actinidia23270 Actinidia chinensis HOM05D000955 ORTHO05D001429 3.8e-18 94.7 94 66.0
Dinv35967 Davidia involucrata HOM05D000955 ORTHO05D001429 1.1e-17 93.2 80 75.0
QL02p004928 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-16 89.7 80 73.8
QL02p005025 Quercus lobata HOM05D000955 ORTHO05D001429 1.2e-16 89.7 80 73.8
QL02p005070 Quercus lobata HOM05D000955 ORTHO05D001429 2.1e-16 89.0 80 75.0
Thecc.08G008500 Theobroma cacao HOM05D000955 ORTHO05D001429 2.8e-16 88.6 60 70.0
Rhsim07G0228700 Rhododendron simsii HOM05D000955 ORTHO05D001429 2.0e-14 82.4 61 70.5
vmacro04454 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 2.0e-14 82.4 60 70.0
CSS0012590 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 9.8e-14 80.1 55 72.7
CSS0008676 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.7e-13 78.2 55 70.9
Actinidia29868 Actinidia chinensis HOM05D000955 ORTHO05D001429 1.8e-12 75.9 53 71.7
CSS0003971 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 2.4e-12 75.5 59 69.5
CSS0027110 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.1e-12 75.1 55 70.9
Hma1.2p1_0982F.1_g243960 Hydrangea macrophylla HOM05D000955 ORTHO05D001429 3.1e-12 75.1 80 51.2
CSS0049247 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 4.1e-12 74.7 55 70.9
Nitab4.5_0001024g0060 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-11 72.0 55 58.2
Nitab4.5_0006068g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.7e-11 72.0 57 56.1
CSS0009132 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 3.5e-11 71.6 55 67.3
Nitab4.5_0002468g0040 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.5e-11 71.6 57 56.1
CAN.G1938.3 Capsicum annuum HOM05D000955 ORTHO05D001429 5.9e-11 70.9 55 54.5
Sopen07g012140 Solanum pennellii HOM05D000955 ORTHO05D001429 7.8e-11 70.5 77 44.2
Nitab4.5_0002501g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-10 70.1 77 45.5
TWI36G1204 Tripterygium wilfordii HOM05D000955 ORTHO05D001429 1.0e-10 70.1 84 47.6
CAN.G705.3 Capsicum annuum HOM05D000955 ORTHO05D001429 1.3e-10 69.7 55 54.5
Ciclev10002898m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.3e-10 69.7 76 47.4
Ciclev10002944m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.3e-10 69.7 73 65.8
Peaxi162Scf00303g00141 Petunia axillaris HOM05D000955 ORTHO05D001429 1.3e-10 69.7 77 46.8
vmacro23310 Vaccinium macrocarpon HOM05D000955 ORTHO05D001429 1.3e-10 69.7 56 58.9
CSS0046588 Camellia sinensis var. sinensis HOM05D000955 ORTHO05D001429 1.7e-10 69.3 55 67.3
Nitab4.5_0000686g0190 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.7e-10 69.3 53 56.6
Thecc.08G008600 Theobroma cacao HOM05D000955 ORTHO05D001429 1.7e-10 69.3 89 40.4
Nitab4.5_0001847g0020 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.9e-10 68.6 57 52.6
PGSC0003DMG400004460 Solanum tuberosum HOM05D000955 ORTHO05D001429 2.9e-10 68.6 75 45.3
CAN.G445.5 Capsicum annuum HOM05D000955 ORTHO05D001429 3.8e-10 68.2 55 54.5
Nitab4.5_0000686g0120 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.0e-10 67.8 57 54.4
Nitab4.5_0000686g0180 Nicotiana tabacum HOM05D000955 ORTHO05D001429 5.0e-10 67.8 57 54.4
Sopen01g015530 Solanum pennellii HOM05D000955 ORTHO05D001429 6.6e-10 67.4 77 41.6
Cfa018542 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.1e-09 66.6 53 58.5
Nitab4.5_0001847g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.1e-09 66.6 57 52.6
Nitab4.5_0010940g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.1e-09 66.6 57 52.6
Solyc01g150126.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 1.1e-09 66.6 77 41.6
CiPaw.15G058900 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.5e-09 66.2 52 63.5
Nitab4.5_0008115g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.9e-09 65.9 57 52.6
Atru.chr13.673 Acer truncatum HOM05D000955 ORTHO05D001429 2.5e-09 65.5 53 56.6
Atru.chr13.685 Acer truncatum HOM05D000955 ORTHO05D001429 2.5e-09 65.5 75 46.7
Nitab4.5_0000686g0100 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.5e-09 65.5 57 52.6
Nitab4.5_0001722g0010 Nicotiana tabacum HOM05D001454 ORTHO05D001429 2.5e-09 65.5 51 56.9
Sopen04g032660 Solanum pennellii HOM05D000955 ORTHO05D001429 3.3e-09 65.1 57 50.9
Cfa018533 Carpinus fangiana HOM05D000955 ORTHO05D001429 4.3e-09 64.7 59 54.2
HanXRQChr09g0267671 Helianthus annuus HOM05D000955 ORTHO05D001429 4.3e-09 64.7 82 50.0
CAN.G371.25 Capsicum annuum HOM05D000955 ORTHO05D001429 5.6e-09 64.3 56 50.0
Atru.chr13.675 Acer truncatum HOM05D000955 ORTHO05D001429 7.3e-09 63.9 54 57.4
Nitab4.5_0006312g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 7.3e-09 63.9 53 54.7
Peaxi162Scf00252g00112 Petunia axillaris HOM05D000955 ORTHO05D001429 7.3e-09 63.9 57 50.9
Peaxi162Scf01073g00017 Petunia axillaris HOM05D000955 ORTHO05D003340 7.3e-09 63.9 55 56.4
Rhsim07G0228800 Rhododendron simsii HOM05D000955 ORTHO05D001429 7.3e-09 63.9 60 58.3
PGSC0003DMG400023125 Solanum tuberosum HOM05D000955 ORTHO05D001429 7.3e-09 63.9 77 40.3
CAN.G371.24 Capsicum annuum HOM05D000955 ORTHO05D001429 9.5e-09 63.5 57 50.9
Gohir.D02G091700 Gossypium hirsutum HOM05D000955 ORTHO05D001429 9.5e-09 63.5 80 42.5
Gorai.005G102800 Gossypium raimondii HOM05D000955 ORTHO05D001429 9.5e-09 63.5 80 42.5
Lsat_1_v5_gn_4_125200 Lactuca sativa HOM05D000955 ORTHO05D001429 9.5e-09 63.5 53 56.6
PGSC0003DMG400008042 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.2e-08 63.2 53 52.8
Ciclev10003391m.g Citrus clementina HOM05D000955 ORTHO05D001429 1.6e-08 62.8 48 62.5
Gohir.A01G119200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-08 62.8 73 43.8
Gohir.D01G107400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.6e-08 62.8 73 43.8
Gorai.002G131800 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.6e-08 62.8 73 43.8
Manes.18G036100 Manihot esculenta HOM05D000955 ORTHO05D001429 2.1e-08 62.4 84 42.9
Nitab4.5_0000686g0170 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.1e-08 62.4 60 48.3
CAN.G371.22 Capsicum annuum HOM05D000955 ORTHO05D001429 2.8e-08 62.0 57 49.1
Cfa018537 Carpinus fangiana HOM05D000955 ORTHO05D001429 2.8e-08 62.0 48 58.3
Atru.chr13.679 Acer truncatum HOM05D000955 ORTHO05D001429 3.6e-08 61.6 49 59.2
Atru.chr13.682 Acer truncatum HOM05D000955 ORTHO05D001429 3.6e-08 61.6 79 44.3
Nitab4.5_0001847g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 3.6e-08 61.6 51 52.9
Thecc.08G009900 Theobroma cacao HOM05D000955 ORTHO05D001429 3.6e-08 61.6 80 42.5
Gohir.D06G016200 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.7e-08 61.2 80 55.0
Gorai.010G019100 Gossypium raimondii HOM05D000955 ORTHO05D001429 4.7e-08 61.2 80 55.0
HanXRQChr09g0267841 Helianthus annuus HOM05D000955 ORTHO05D001429 4.7e-08 61.2 71 40.8
Nitab4.5_0001580g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 4.7e-08 61.2 52 53.8
QL02p005158 Quercus lobata HOM05D000955 ORTHO05D001429 4.7e-08 61.2 77 39.0
Atru.chr13.676 Acer truncatum HOM05D000955 ORTHO05D001429 6.1e-08 60.8 46 63.0
Lsat_1_v5_gn_4_125420 Lactuca sativa HOM05D000955 ORTHO05D001429 6.1e-08 60.8 68 41.2
CiPaw.16G045300 Carya illinoinensis HOM05D000955 ORTHO05D001429 8.0e-08 60.5 56 50.0
Gohir.A06G017900 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.0e-07 60.1 84 52.4
Nitab4.5_0001101g0030 Nicotiana tabacum HOM05D000955 ORTHO05D001429 1.0e-07 60.1 57 49.1
Atru.chr13.672 Acer truncatum HOM05D000955 ORTHO05D001429 1.4e-07 59.7 56 46.4
Cfa018536 Carpinus fangiana HOM05D000955 ORTHO05D001429 1.4e-07 59.7 48 58.3
CiPaw.15G060000 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.4e-07 59.7 52 55.8
Gohir.D06G016300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 1.4e-07 59.7 80 41.2
Gorai.010G019200 Gossypium raimondii HOM05D000955 ORTHO05D001429 1.4e-07 59.7 80 41.2
Peaxi162Scf01890g00010 Petunia axillaris HOM05D000955 ORTHO05D001429 1.4e-07 59.7 42 64.3
CiPaw.16G045200 Carya illinoinensis HOM05D000955 ORTHO05D001429 1.8e-07 59.3 47 57.4
PGSC0003DMG400015414 Solanum tuberosum HOM05D000955 ORTHO05D001429 1.8e-07 59.3 52 53.8
Thecc.08G008700 Theobroma cacao HOM05D000955 ORTHO05D001429 1.8e-07 59.3 49 61.2
Thecc.08G008900 Theobroma cacao HOM05D000955 ORTHO05D001429 1.8e-07 59.3 58 51.7
Nitab4.5_0015075g0010 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.3e-07 58.9 46 58.7
CAN.G1518.8 Capsicum annuum HOM05D000955 ORTHO05D001429 3.0e-07 58.5 52 51.9
Duzib116G0476 Durio zibethinus HOM05D000955 ORTHO05D001429 3.0e-07 58.5 83 41.0
CAN.G371.23 Capsicum annuum HOM05D000955 ORTHO05D001429 4.0e-07 58.2 53 45.3
HanXRQChr09g0267701 Helianthus annuus HOM05D000955 ORTHO05D001429 4.0e-07 58.2 54 46.3
QL02p005106 Quercus lobata HOM05D000955 ORTHO05D001429 5.2e-07 57.8 77 51.9
QL11p020910 Quercus lobata HOM05D000955 ORTHO05D001429 5.2e-07 57.8 77 50.6
Solyc12g088840.1 Solanum lycopersicum HOM05D000955 ORTHO05D001429 5.2e-07 57.8 53 50.9
Ciclev10003536m.g Citrus clementina HOM05D000955 ORTHO05D001429 6.8e-07 57.4 41 70.7
Atru.chr13.681 Acer truncatum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 47 61.7
Duzib093G0375 Durio zibethinus HOM05D000955 ORTHO05D001429 8.9e-07 57.0 82 39.0
FAN20G2972 Fragaria x ananassa HOM05D017863 ORTHO05D020646 8.9e-07 57.0 53 50.9
Gohir.D06G016500 Gossypium hirsutum HOM05D000955 ORTHO05D001429 8.9e-07 57.0 49 57.1
Gorai.010G019400 Gossypium raimondii HOM05D000955 ORTHO05D001429 8.9e-07 57.0 49 57.1
HPP92_016724 Vanilla planifolia HOM05D000955 ORTHO05D003340 1.2e-06 56.6 58 50.0
Atru.chr13.674 Acer truncatum HOM05D000955 ORTHO05D001429 1.5e-06 56.2 52 50.0
Manes.05G173200 Manihot esculenta HOM05D000955 ORTHO05D001429 2.0e-06 55.8 72 41.7
CiPaw.16G045100 Carya illinoinensis HOM05D000955 ORTHO05D001429 2.6e-06 55.5 53 58.5
AUR62034571 Chenopodium quinoa HOM05D000955 ORTHO05D001429 2.6e-06 55.5 53 49.1
Gorai.010G019300 Gossypium raimondii HOM05D000955 ORTHO05D001429 2.6e-06 55.5 69 44.9
Nitab4.5_0001101g0050 Nicotiana tabacum HOM05D000955 ORTHO05D001429 2.6e-06 55.5 69 44.9
QL02p005168 Quercus lobata HOM05D000955 ORTHO05D001429 2.6e-06 55.5 77 36.4
Atru.chr13.660 Acer truncatum HOM05D000955 ORTHO05D001429 3.4e-06 55.1 84 38.1
CiPaw.15G059000 Carya illinoinensis HOM05D000955 ORTHO05D001429 3.4e-06 55.1 52 55.8
AUR62014426 Chenopodium quinoa HOM05D000955 ORTHO05D001429 3.4e-06 55.1 53 49.1
Gohir.A06G018101 Gossypium hirsutum HOM05D000955 ORTHO05D001429 3.4e-06 55.1 69 43.5
Phvul.001G021750 Phaseolus vulgaris HOM05D000955 ORTHO05D001429 3.4e-06 55.1 66 42.4
Sopen12g030730 Solanum pennellii HOM05D000955 ORTHO05D001429 3.4e-06 55.1 52 48.1
TAR628G1637 Trochodendron aralioides HOM05D000955 ORTHO05D003340 3.4e-06 55.1 46 54.3
COL.COLO4_26488 Corchorus olitorius HOM05D000955 ORTHO05D001429 4.4e-06 54.7 60 48.3
Gohir.D06G016400 Gossypium hirsutum HOM05D000955 ORTHO05D001429 4.4e-06 54.7 69 43.5
Nitab4.5_0000686g0110 Nicotiana tabacum HOM05D000955 ORTHO05D003340 4.4e-06 54.7 69 44.9
Atru.chr13.683 Acer truncatum HOM05D000955 ORTHO05D001429 5.7e-06 54.3 87 40.2
Gohir.A06G018300 Gossypium hirsutum HOM05D000955 ORTHO05D001429 5.7e-06 54.3 49 57.1
CAN.G371.27 Capsicum annuum HOM05D000955 ORTHO05D001429 7.5e-06 53.9 49 53.1
CiPaw.15G060400 Carya illinoinensis HOM05D000955 ORTHO05D001429 7.5e-06 53.9 84 53.6
Sed0002759 Sechium edule HOM05D000955 ORTHO05D001429 7.5e-06 53.9 53 50.9
PGSC0003DMG400007984 Solanum tuberosum HOM05D000955 ORTHO05D001429 9.8e-06 53.5 49 53.1


User provided reference genes

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