Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1452.2 739 100.0
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 735 91.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1212.2 737 84.1
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 738 82.2
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 736 80.8
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1160.6 736 80.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1156.4 736 81.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1155.2 736 80.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1154.4 736 80.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1151.3 736 80.8
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1151.0 736 80.6
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1149.4 735 80.7
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 736 80.4
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1148.7 736 80.8
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1146.7 736 81.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1146.3 733 79.9
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1146.3 737 80.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1146.0 735 81.5
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1144.8 737 80.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1143.6 737 80.5
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1143.3 735 81.1
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1142.9 731 80.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1142.5 737 79.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 736 80.8
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1139.8 735 79.7
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1139.0 736 79.2
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1139.0 735 80.5
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 735 80.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1137.1 735 81.0
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1135.2 729 80.4
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1132.9 736 78.9
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1132.9 735 78.6
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1132.1 735 78.9
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 736 79.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1130.9 736 80.6
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 736 80.3
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1130.5 735 81.0
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1130.2 737 79.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1129.8 736 80.2
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1129.4 736 78.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1129.0 735 81.4
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1127.1 736 79.2
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1126.7 735 79.2
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1126.7 735 78.0
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 736 78.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1126.3 735 78.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1125.9 736 79.5
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1125.9 736 79.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1125.9 736 80.6
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 737 79.4
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1125.2 723 81.1
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1124.4 737 79.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1123.6 723 80.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1122.8 737 78.8
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1122.5 734 78.5
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1122.1 724 79.6
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1121.7 723 80.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1121.3 735 79.6
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1121.3 723 79.3
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1120.9 737 78.8
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1120.9 738 78.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1120.5 770 71.9
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1118.6 737 78.6
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1117.8 723 80.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1117.4 723 80.5
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 735 77.8
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 731 80.4
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1117.1 738 78.5
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1116.7 737 79.4
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1115.9 733 78.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1115.5 720 78.9
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1114.8 786 75.6
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 733 78.9
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 733 78.2
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1114.4 734 79.2
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1114.0 733 78.4
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1112.8 734 78.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1110.9 723 79.1
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1110.5 750 77.3
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1110.1 735 77.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1109.7 735 78.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1109.4 724 79.3
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1109.0 723 79.0
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1108.2 735 78.8
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1107.4 735 76.9
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1107.4 735 77.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1107.4 735 77.7
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1104.0 734 77.8
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1103.6 727 78.3
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1102.0 735 79.2
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 732 77.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 735 78.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 735 78.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 735 78.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1100.9 735 78.1
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1100.1 734 77.9
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1099.7 759 75.2
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1099.7 737 77.2
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1099.0 734 77.7
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1099.0 734 77.7
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1099.0 734 77.7
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1098.2 734 76.4
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1097.8 734 77.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1096.3 734 77.8
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1095.1 732 76.5
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1094.7 724 79.7
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1094.3 735 77.7
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1091.3 729 77.6
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1090.1 737 76.4
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1088.6 737 78.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1087.8 735 75.8
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1086.2 711 78.8
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1085.1 760 74.9
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1083.2 723 77.2
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1082.8 735 77.6
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1080.5 723 77.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1079.7 733 75.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1079.3 729 76.5
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1077.8 719 77.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 5.1e-312 1073.9 744 76.7
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 1.3e-310 1069.3 740 75.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 8.5e-310 1066.6 735 77.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 1.0e-307 1059.7 725 71.4
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 2.6e-306 1055.0 778 71.0
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 9.1e-304 1046.6 737 72.9
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 7.7e-303 1043.5 775 72.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 8.5e-302 1040.0 669 82.2
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 1.1e-301 1039.6 736 73.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 1.5e-298 1029.2 733 72.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 2.0e-298 1028.9 724 74.3
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 9.8e-298 1026.5 724 74.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 2.4e-296 1021.9 667 80.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 2.9e-294 1015.0 733 71.9
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 1.6e-292 1009.2 733 70.8
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 6.3e-289 997.3 669 76.5
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 6.3e-289 997.3 802 67.7
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 2.0e-287 992.3 735 74.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 5.2e-283 977.6 735 71.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.2e-283 977.6 728 70.2
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 6.8e-283 977.2 732 69.3
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 7.5e-274 947.2 670 72.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 6.0e-247 857.8 722 66.5
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.9e-246 855.1 545 82.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.6e-239 833.2 491 82.5
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 1.9e-229 799.7 528 72.2
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.0e-209 734.2 488 74.6
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 3.2e-208 729.2 428 83.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.4e-198 697.2 734 57.4
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.2e-155 553.1 360 85.0
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 7.3e-136 488.8 377 64.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.7e-124 451.1 625 46.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.0e-105 388.7 314 73.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-91 342.0 433 49.0
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.7e-89 332.8 215 77.2
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.5e-75 286.6 618 40.8
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 2.9e-60 237.7 131 83.2
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.1e-54 217.2 192 62.5
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.7e-50 203.8 139 71.2
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 7.8e-45 186.4 163 57.7
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.6e-32 144.8 535 27.3
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.2e-30 137.9 76 84.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.7e-29 134.8 465 27.1
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.3e-28 132.5 479 26.5
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.2e-24 119.4 68 83.8
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.2e-24 119.4 402 28.6
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.4e-22 111.7 394 26.4
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 7.8e-21 106.7 68 72.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 5.1e-20 104.0 132 50.0
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-13 81.3 255 27.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.8e-12 79.0 76 53.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-11 75.9 301 24.9
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.2e-08 66.2 124 33.1
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 9.9e-08 63.2 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.9e-06 58.9 41 70.7


User provided reference genes

Program Settings