Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 6.6e-215 750.4 363 100.0
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.2e-171 606.7 369 83.2
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 2.3e-143 512.7 363 73.3
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 5.7e-142 508.1 333 76.3
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 9.2e-124 447.6 332 66.6
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 8.9e-119 431.0 306 68.0
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.6e-118 429.5 312 68.6
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 4.4e-118 428.7 361 60.7
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 5.8e-118 428.3 298 70.5
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 2.2e-117 426.4 356 61.5
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 2.9e-117 426.0 358 60.1
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 1.9e-116 423.3 362 60.8
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 4.1e-116 422.2 358 60.6
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.2e-115 420.6 349 61.0
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 2.1e-115 419.9 374 59.1
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.0e-114 417.5 302 65.9
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.3e-114 417.2 363 59.0
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 3.9e-114 415.6 332 64.2
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 5.6e-113 411.8 361 57.3
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 1.2e-112 410.6 358 60.6
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.6e-112 410.2 304 65.8
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 8.1e-112 407.9 358 58.1
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 3.1e-111 406.0 333 59.8
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.7e-109 400.2 361 55.7
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 2.9e-109 399.4 307 63.2
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 4.9e-109 398.7 302 64.6
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.4e-108 397.1 361 56.8
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 4.6e-107 392.1 246 74.8
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 6.0e-107 391.7 302 62.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 7.8e-107 391.3 361 55.7
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 3.9e-106 389.0 300 62.7
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.6e-104 383.6 300 63.0
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 2.8e-104 382.9 363 53.4
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 3.6e-104 382.5 277 69.3
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 3.6e-104 382.5 341 57.2
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 4.7e-104 382.1 313 60.7
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 8.1e-104 381.3 296 61.5
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 1.4e-103 380.6 308 62.3
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 2.4e-103 379.8 303 60.1
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 3.1e-103 379.4 329 58.1
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 4.0e-103 379.0 300 61.0
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 9.0e-103 377.9 306 62.1
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 9.0e-103 377.9 366 54.6
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.5e-102 377.1 302 61.3
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 2.0e-102 376.7 313 60.1
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.6e-102 376.3 301 61.8
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 3.4e-102 375.9 301 62.8
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 4.4e-102 375.6 305 61.0
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 5.8e-102 375.2 329 57.1
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 5.8e-102 375.2 329 58.4
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.3e-101 374.0 309 61.5
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 2.2e-101 373.2 298 60.4
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 2.9e-101 372.9 329 57.4
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.8e-101 372.5 363 53.4
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.9e-100 370.2 336 56.5
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 4.2e-100 369.0 309 60.5
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 4.2e-100 369.0 363 54.3
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 5.4e-100 368.6 300 61.0
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 7.1e-100 368.2 339 57.2
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 9.3e-100 367.9 306 60.1
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 1.2e-99 367.5 342 55.6
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 2.1e-99 366.7 301 59.8
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 1.3e-98 364.0 302 60.3
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 3.9e-98 362.5 305 58.0
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 6.6e-98 361.7 339 56.0
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.9e-97 360.1 302 59.9
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.9e-97 360.1 350 55.4
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 5.6e-97 358.6 306 58.8
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 1.3e-96 357.5 324 58.0
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 6.2e-96 355.1 363 51.0
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 8.1e-96 354.8 302 60.6
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 3.1e-95 352.8 312 56.7
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 5.3e-95 352.1 279 62.4
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 9.0e-95 351.3 376 48.9
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.7e-93 347.1 360 51.4
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 8.4e-93 344.7 302 57.3
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 8.4e-93 344.7 290 59.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.1e-92 344.4 361 51.0
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.9e-92 343.6 335 53.4
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.4e-92 343.2 248 64.9
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.4e-92 343.2 316 54.7
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 5.4e-92 342.0 305 57.7
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 7.9e-91 338.2 340 53.5
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.3e-90 336.7 316 53.8
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 4.3e-89 332.4 277 58.1
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.6e-88 330.5 319 53.9
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.7e-88 329.3 293 57.0
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.8e-88 328.9 303 56.4
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 9.0e-87 324.7 310 54.2
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 9.9e-86 321.2 310 52.9
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 4.6e-83 312.4 243 63.4
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.5e-81 306.6 303 51.5
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 3.1e-79 299.7 445 40.2
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.4e-76 290.8 301 50.2
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.6e-75 287.3 190 71.6
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 1.3e-74 284.3 314 49.0
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 4.5e-70 269.2 308 48.7
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 6.1e-67 258.8 236 56.8
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 2.2e-64 250.4 303 45.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 2.9e-61 240.0 327 42.8
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.0e-57 227.3 296 43.6
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 5.7e-57 225.7 276 45.3
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 2.6e-54 216.9 341 39.3
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 6.7e-50 202.2 169 58.0
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 3.1e-47 193.4 394 36.0
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.3e-47 192.6 191 57.6
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.3e-42 177.2 368 33.4
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 7.7e-30 135.6 342 33.9
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.9e-29 133.7 108 57.4
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 4.9e-24 116.3 109 55.0
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.1e-23 115.2 216 36.1
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.3e-21 107.5 181 35.9
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 5.6e-20 102.8 107 49.5
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 5.8e-17 92.8 115 45.2
CSS0014268 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.9e-08 63.9 107 36.4
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 7.8e-06 55.8 47 61.7


User provided reference genes

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