Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 0.0e+00 1129.0 602 100.0
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.3e-236 823.2 544 85.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 7.7e-176 621.3 546 62.8
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.0e-167 592.0 553 63.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.1e-161 574.3 557 61.4
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 7.7e-160 568.2 546 62.1
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.0e-156 556.2 545 60.9
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.0e-156 555.8 574 59.1
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 4.3e-150 535.8 554 57.9
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 2.1e-149 533.5 595 56.1
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.0e-148 531.2 543 61.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.0e-148 531.2 550 59.3
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.4e-148 530.8 561 58.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 7.5e-147 525.0 557 55.3
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.7e-146 523.9 548 55.7
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 3.2e-145 519.6 544 59.2
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.0e-144 516.9 499 60.3
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.7e-144 516.5 592 55.4
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 4.6e-144 515.8 541 57.9
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.0e-144 515.4 545 60.7
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.8e-144 515.0 548 56.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.7e-143 513.8 550 56.2
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 8.6e-143 511.5 548 55.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 2.5e-142 510.0 553 57.9
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.2e-141 505.4 554 59.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.4e-140 504.2 558 52.3
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 4.0e-140 502.7 553 57.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.6e-139 500.0 548 53.6
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.4e-139 499.2 551 57.7
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.8e-139 498.8 548 53.5
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.7e-138 496.1 561 57.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 3.7e-138 496.1 551 57.0
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 4.9e-138 495.7 548 53.3
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.4e-137 493.4 540 55.6
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.1e-137 492.7 552 53.3
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-136 491.1 550 53.3
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.6e-136 490.7 545 56.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.6e-136 489.2 544 53.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.0e-135 488.0 556 58.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.3e-135 486.9 564 55.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.0e-135 486.5 550 56.9
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 8.6e-135 485.0 550 54.7
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-134 484.6 549 55.2
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-134 484.6 627 48.5
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.5e-134 484.2 553 56.4
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 3.3e-134 483.0 553 56.1
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 5.6e-134 482.3 557 54.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 2.1e-133 480.3 544 56.2
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.1e-133 480.3 544 52.6
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 8.1e-133 478.4 551 54.1
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 6.8e-132 475.3 549 56.5
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 3.8e-130 469.5 564 53.0
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 8.4e-130 468.4 626 50.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.4e-129 466.8 547 53.9
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 9.2e-129 464.9 546 54.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.7e-128 463.4 548 53.8
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.7e-127 460.7 542 56.5
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.1e-126 458.0 557 53.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.5e-126 457.6 497 55.5
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 3.3e-126 456.4 562 55.5
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 3.3e-126 456.4 555 52.8
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.1e-125 453.8 541 54.0
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 2.8e-125 453.4 546 53.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 8.9e-124 448.4 544 51.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 9.9e-123 444.9 561 54.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-121 441.4 555 53.9
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.4e-121 440.3 563 54.4
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.4e-121 439.1 557 51.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 9.3e-121 438.3 561 54.9
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 2.7e-120 436.8 556 51.6
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.6e-120 436.0 542 54.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.6e-120 436.0 542 54.4
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.3e-119 434.5 619 50.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.3e-119 433.7 557 52.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 8.7e-119 431.8 559 49.6
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-118 431.4 555 52.8
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 3.3e-118 429.9 541 51.8
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 5.6e-118 429.1 555 51.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 8.1e-117 425.2 553 54.1
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.4e-116 423.7 549 49.9
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.0e-115 420.6 546 54.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 3.4e-115 419.9 533 55.0
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 5.8e-115 419.1 543 47.1
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.1e-112 410.6 542 52.0
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.9e-110 404.1 558 50.5
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 9.6e-110 401.7 543 52.5
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.8e-109 400.2 550 50.9
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 8.1e-109 398.7 558 50.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.0e-108 395.2 558 50.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.5e-107 394.4 560 50.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.5e-107 392.9 545 50.6
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 5.8e-107 392.5 538 49.4
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 3.8e-106 389.8 544 46.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.1e-105 388.3 555 49.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.4e-105 387.1 435 54.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 3.2e-105 386.7 557 46.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 4.6e-104 382.9 543 47.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 6.0e-104 382.5 538 47.6
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 6.7e-103 379.0 541 49.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.3e-102 376.3 541 45.7
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.1e-100 371.7 549 49.4
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.7e-96 357.1 542 48.0
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.0e-96 355.9 546 47.8
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.0e-95 355.1 571 42.2
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.9e-95 353.2 565 41.8
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 8.7e-95 352.1 545 48.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.5e-94 351.3 674 38.0
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.9e-94 350.9 546 47.4
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 7.4e-94 349.0 552 47.6
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 7.4e-94 349.0 552 47.6
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 1.0e-90 338.6 369 55.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.8e-76 291.2 585 38.1
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.1e-76 290.4 295 56.9
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-75 288.5 305 54.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.3e-74 285.0 535 43.9
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 7.2e-73 279.3 535 43.2
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 7.2e-73 279.3 535 43.2
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.4e-70 270.0 535 42.6
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.2e-67 261.9 317 50.2
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 4.2e-65 253.4 409 46.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.7e-59 234.2 414 46.4
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.0e-55 222.2 251 61.4
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 8.8e-55 219.2 587 35.3
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.2e-49 200.7 190 58.4
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 1.2e-46 192.2 598 32.4
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.4e-46 190.7 170 63.5
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 2.2e-45 188.0 422 36.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-44 185.3 530 32.8
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.0e-42 176.8 298 44.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 6.6e-42 176.4 294 39.5
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-38 165.6 265 47.5
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.5e-38 165.2 198 55.1
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.4e-36 157.9 212 51.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.5e-33 146.0 226 47.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.7e-32 143.7 717 27.1
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.6e-30 137.9 113 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.7e-29 134.0 558 29.7
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 2.7e-27 127.9 473 29.4
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-22 111.7 98 60.2
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.4e-22 110.9 233 38.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.9e-21 107.8 140 47.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.6e-19 102.1 99 55.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.9e-18 97.4 116 50.0
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 7.6e-14 83.2 187 38.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 3.2e-12 77.8 174 33.9
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.0e-10 72.8 489 26.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.3e-09 67.8 105 46.7
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.2e-07 60.5 100 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.6e-06 58.2 252 29.8
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.4e-06 57.4 366 27.9


User provided reference genes

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