Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 4.6e-121 438.0 229 100.0
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.0e-88 328.9 212 79.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 5.1e-88 328.2 236 74.2
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.1e-87 327.0 209 80.4
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.3e-85 318.2 224 75.0
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 7.9e-81 304.3 236 70.8
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.4e-80 303.5 224 71.9
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 3.9e-80 302.0 237 67.9
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.3e-79 298.9 233 70.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 9.7e-79 297.4 233 68.7
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.8e-77 293.1 234 65.4
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 2.6e-76 289.3 231 66.2
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.7e-75 286.6 235 66.4
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 8.5e-75 284.3 231 65.8
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 8.0e-73 277.7 223 66.4
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.9e-72 275.4 230 61.7
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 8.8e-72 274.2 224 62.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.1e-71 273.9 227 64.3
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 9.7e-71 270.8 227 67.0
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.3e-70 270.4 214 66.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-70 269.2 227 63.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.8e-70 269.2 227 63.0
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.8e-70 269.2 227 63.0
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.1e-69 267.3 224 61.2
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.4e-69 266.9 234 61.1
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 1.4e-69 266.9 226 63.7
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.8e-69 266.5 234 62.8
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.4e-69 266.2 227 62.1
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.1e-69 265.8 230 64.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 9.1e-69 264.2 226 60.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.6e-68 262.7 230 57.8
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.5e-68 262.3 234 61.1
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 5.9e-68 261.5 226 59.3
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 7.7e-68 261.2 234 58.1
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 7.7e-68 261.2 227 62.1
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.0e-67 260.8 201 70.1
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.9e-67 259.2 192 65.6
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.9e-67 259.2 231 60.2
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.9e-67 259.2 222 63.1
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 5.0e-67 258.5 226 59.7
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 8.5e-67 257.7 192 67.7
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 8.5e-67 257.7 228 57.5
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.1e-66 257.3 230 60.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.9e-66 256.5 236 59.7
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.9e-66 256.5 196 63.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.5e-66 256.1 201 65.2
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.5e-66 256.1 229 59.0
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 4.2e-66 255.4 233 58.4
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 4.2e-66 255.4 234 56.8
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 5.5e-66 255.0 236 58.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 5.5e-66 255.0 234 60.3
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 5.5e-66 255.0 229 56.8
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 7.2e-66 254.6 234 60.7
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 7.2e-66 254.6 228 58.8
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 1.2e-65 253.8 233 61.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-65 253.4 235 62.6
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 2.7e-65 252.7 234 60.3
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.6e-65 252.3 234 59.4
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 3.6e-65 252.3 228 57.5
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.8e-64 250.0 232 59.5
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.8e-64 250.0 221 61.5
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 2.3e-64 249.6 233 57.5
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.0e-64 249.2 230 56.5
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.0e-64 248.8 225 56.9
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 8.8e-64 247.7 221 57.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.5e-63 246.9 232 59.5
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 2.0e-63 246.5 196 59.7
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.0e-63 246.5 194 58.8
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.4e-63 245.7 233 57.5
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 4.4e-63 245.4 196 61.7
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 7.5e-63 244.6 194 59.3
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 9.7e-63 244.2 198 65.7
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 9.7e-63 244.2 225 60.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 228 57.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.8e-62 242.7 225 60.9
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.8e-62 242.7 232 57.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.7e-62 242.3 223 55.6
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 6.3e-62 241.5 194 57.7
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 6.3e-62 241.5 230 55.2
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 8.3e-62 241.1 194 57.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.4e-61 240.4 195 57.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.4e-61 240.4 195 57.9
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.4e-61 240.4 234 56.0
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.8e-61 240.0 232 56.0
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 4.1e-61 238.8 192 57.8
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 7.0e-61 238.0 195 57.4
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 7.0e-61 238.0 233 54.5
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 9.1e-61 237.7 194 56.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.1e-61 237.7 190 57.9
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 9.1e-61 237.7 199 63.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.0e-60 236.5 230 57.4
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.5e-60 235.7 232 56.0
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 7.7e-60 234.6 226 55.3
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.0e-59 234.2 233 55.8
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.3e-59 233.8 215 59.5
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.7e-59 233.4 198 58.6
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 3.8e-59 232.3 227 58.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 8.5e-59 231.1 257 55.3
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 8.5e-59 231.1 235 56.2
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 8.5e-59 231.1 228 54.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 3.2e-58 229.2 198 58.6
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 5.5e-58 228.4 183 58.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.6e-57 226.9 226 57.1
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.8e-56 223.4 198 59.1
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.2e-55 220.7 246 52.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.2e-55 220.7 257 49.4
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.5e-55 220.3 244 50.4
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 2.0e-55 219.9 243 49.8
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 5.7e-55 218.4 244 50.0
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 5.7e-55 218.4 237 51.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.7e-54 216.9 231 51.9
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.1e-53 214.2 187 58.8
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.1e-53 212.2 262 46.9
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.2e-49 200.7 161 62.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.1e-49 199.9 180 56.7
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 4.7e-49 198.7 194 57.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.4e-48 197.2 180 55.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 8.9e-48 194.5 159 59.7
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.5e-47 191.4 142 66.2
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 2.8e-46 189.5 124 75.8
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.8e-46 189.5 149 65.8
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-45 187.2 234 47.4
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.6e-44 183.7 206 49.5
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 2.9e-43 179.5 230 46.1
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.5e-42 176.4 305 40.3
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.7e-38 163.7 134 63.4
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.7e-38 162.5 196 45.9
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.6e-36 155.6 154 51.9
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 3.6e-33 146.0 223 40.4
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 2.3e-32 143.3 256 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.2e-29 132.9 186 41.4
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.1e-28 130.2 187 40.1
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.7e-27 127.1 243 35.8
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.3e-26 122.5 116 56.0
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 3.6e-25 119.4 184 38.6
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.1e-24 117.9 143 47.6
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.9e-22 109.8 76 73.7
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.3e-19 100.1 88 56.8
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.1e-17 93.6 95 50.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 8.7e-11 71.6 72 47.2
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 8.1e-09 65.1 142 31.7
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 8.1e-09 65.1 206 25.2
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.6e-07 60.1 77 50.6
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.4e-07 59.3 77 50.6
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 9.9e-07 58.2 51 62.7


User provided reference genes

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