Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 8.0e-176 620.5 364 100.0
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.7e-82 308.5 371 52.8
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.3e-80 304.3 364 52.2
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.2e-51 208.0 377 39.5
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.4e-47 194.5 366 38.8
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 5.0e-45 186.0 299 46.8
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.2e-35 154.8 407 29.2
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.3e-34 150.6 410 30.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.3e-34 150.6 410 30.2
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.2e-34 149.4 341 34.9
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 8.9e-34 148.7 410 29.8
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.0e-33 147.5 368 32.9
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 2.6e-33 147.1 380 35.3
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 5.7e-33 146.0 422 30.8
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.2e-32 144.1 368 32.6
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.9e-32 142.9 368 31.5
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 6.3e-32 142.5 368 32.3
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.2e-30 138.3 394 30.5
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.2e-30 138.3 370 31.1
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.0e-30 137.5 375 30.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.0e-29 135.2 401 29.4
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.3e-29 134.8 388 28.6
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.9e-29 133.7 382 31.7
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 6.6e-29 132.5 379 29.3
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.5e-28 131.3 366 28.4
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 3.3e-28 130.2 388 34.3
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 5.6e-28 129.4 379 30.3
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 7.3e-28 129.0 330 30.3
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 1.6e-27 127.9 407 27.5
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.6e-27 127.9 393 31.8
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.1e-27 127.5 361 29.1
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 3.6e-27 126.7 395 29.9
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 8.0e-27 125.6 371 28.8
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.8e-26 124.4 413 28.8
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.3e-26 124.0 384 29.4
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-26 123.6 381 28.1
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.1e-26 123.6 379 28.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 4.0e-26 123.2 369 30.1
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.5e-25 121.3 368 31.2
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.4e-25 120.2 381 28.1
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.4e-25 120.2 376 28.2
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 4.4e-25 119.8 359 32.6
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 5.8e-25 119.4 364 28.6
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 7.5e-25 119.0 366 27.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.3e-24 118.2 383 27.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.3e-24 118.2 362 29.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 6.4e-24 115.9 376 27.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.1e-23 115.2 365 29.6
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 5.4e-23 112.8 328 27.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 5.4e-23 112.8 425 26.6
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.0e-23 112.5 390 27.7
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 9.2e-23 112.1 392 28.1
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.2e-22 111.7 379 27.2
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.2e-22 111.7 365 31.5
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.6e-22 111.3 364 29.1
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.6e-22 111.3 375 27.5
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 2.7e-22 110.5 363 31.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 3.5e-22 110.2 377 27.3
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 3.5e-22 110.2 376 28.7
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 6.0e-22 109.4 372 32.3
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 7.8e-22 109.0 367 34.3
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.0e-21 108.6 374 28.1
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 5.0e-21 106.3 369 28.7
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.6e-21 105.9 371 32.9
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 8.6e-21 105.5 324 27.2
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 8.6e-21 105.5 383 27.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.5e-20 104.0 376 34.0
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.3e-20 103.2 374 27.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.3e-20 103.2 368 28.5
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 4.3e-20 103.2 362 31.5
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 7.3e-20 102.4 361 32.1
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 9.5e-20 102.1 371 31.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.8e-19 100.5 370 31.9
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 4.7e-19 99.8 385 28.1
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 6.2e-19 99.4 385 26.8
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.4e-18 98.2 385 25.5
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.8e-18 97.8 337 27.9
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 5.2e-18 96.3 379 27.4
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 5.2e-18 96.3 356 27.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 3.4e-17 93.6 431 26.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 4.4e-17 93.2 386 24.4
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 7.5e-17 92.4 368 32.6
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.3e-16 91.7 364 29.9
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.3e-16 91.7 414 25.8
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.7e-16 91.3 367 26.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.7e-16 90.1 372 27.2
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.7e-16 90.1 326 26.1
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 8.3e-16 89.0 359 29.5
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.1e-15 88.6 373 30.3
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.1e-15 88.6 326 26.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.4e-15 88.2 324 26.2
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 4.1e-15 86.7 372 29.6
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 4.1e-15 86.7 382 27.0
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 4.1e-15 86.7 364 29.4
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 9.2e-15 85.5 372 29.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.1e-14 84.3 387 26.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.5e-14 83.6 251 28.3
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 4.6e-14 83.2 365 29.6
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 6.0e-14 82.8 366 30.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 6.0e-14 82.8 267 26.6
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 7.8e-14 82.4 371 31.8
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.7e-13 81.3 237 28.3
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.7e-13 81.3 363 31.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.7e-13 81.3 352 26.7
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.9e-13 80.1 370 28.9
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.1e-12 78.6 378 24.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.1e-12 78.6 401 24.2
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.5e-12 77.4 379 27.7
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 2.5e-12 77.4 362 23.8
Dinv39518 Davidia involucrata HOM05D005472 ORTHO05D005897 3.3e-12 77.0 72 54.2
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 7.3e-12 75.9 332 26.5
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 8.1e-11 72.4 400 24.8
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.1e-10 70.5 212 30.2
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.0e-10 70.1 317 25.9
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 8.9e-10 68.9 130 37.7
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 2.0e-09 67.8 243 24.3
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.6e-09 67.4 260 23.8
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.1e-07 62.0 148 31.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.4e-07 60.8 246 24.8
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 4.1e-07 60.1 344 23.5
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-06 58.5 417 25.7
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.6e-06 58.2 372 24.7
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.1e-06 57.8 251 24.3
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 2.1e-06 57.8 248 23.4
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.1e-06 57.8 254 25.6
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 7.8e-06 55.8 132 29.5


User provided reference genes

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