Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 7.7e-93 344.0 195 100.0
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.7e-84 316.2 185 97.8
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 4.4e-32 142.1 217 46.5
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 7.6e-32 141.4 216 45.8
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.7e-31 140.2 232 45.7
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.7e-31 140.2 236 41.5
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.2e-30 136.0 232 45.3
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 7.8e-29 131.3 213 44.6
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 5.1e-28 128.6 199 45.2
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 4.8e-26 122.1 280 38.6
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 1.8e-25 120.2 235 40.9
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 2.4e-25 119.8 233 38.6
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 6.9e-25 118.2 252 41.3
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 9.0e-25 117.9 250 39.6
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 9.9e-24 114.4 221 40.7
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 3.2e-22 109.4 257 36.6
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 7.1e-22 108.2 163 46.6
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 1.2e-21 107.5 230 43.0
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.2e-21 107.5 231 39.0
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 2.1e-21 106.7 245 36.7
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 4.6e-21 105.5 142 47.2
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 7.9e-21 104.8 257 36.2
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 3.9e-20 102.4 228 37.3
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 3.9e-20 102.4 251 36.3
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 8.7e-20 101.3 179 43.6
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 1.1e-19 100.9 148 45.9
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 2.5e-19 99.8 228 36.8
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 3.3e-19 99.4 258 37.6
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.6e-19 98.6 259 34.4
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.4e-19 98.2 255 38.0
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 1.3e-18 97.4 264 35.2
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 2.8e-18 96.3 257 34.2
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 1.1e-17 94.4 239 38.5
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 4.0e-17 92.4 231 42.0
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 9.0e-17 91.3 231 39.0
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 9.0e-17 91.3 239 34.7
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 4.5e-16 89.0 225 38.7
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 4.5e-16 89.0 209 35.9
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 5.8e-16 88.6 211 35.5
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 5.8e-16 88.6 270 32.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 5.8e-16 88.6 209 37.8
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 7.6e-16 88.2 149 41.6
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 7.6e-16 88.2 224 36.2
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 2.2e-15 86.7 142 41.5
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.2e-15 86.7 211 35.1
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.2e-15 86.7 254 34.6
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 8.4e-15 84.7 215 34.4
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 1.9e-14 83.6 247 34.8
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 3.2e-14 82.8 163 38.0
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 9.3e-14 81.3 241 37.3
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 1.2e-13 80.9 274 38.7
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 2.1e-13 80.1 212 32.5
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.7e-13 79.7 192 34.9
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 3.5e-13 79.3 242 36.0
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.5e-13 79.3 252 32.9
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 4.6e-13 79.0 92 52.2
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 6.0e-13 78.6 211 34.1
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 7.9e-13 78.2 182 36.3
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 1.0e-12 77.8 120 45.8
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 1.3e-12 77.4 202 36.1
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.3e-12 77.4 251 33.1
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.3e-12 77.4 251 33.1
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 2.3e-12 76.6 46 82.6
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 3.9e-12 75.9 102 51.0
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 3.9e-12 75.9 256 31.6
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 5.6e-11 72.0 100 46.0
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 5.6e-11 72.0 50 76.0
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 7.4e-11 71.6 155 38.7
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 9.6e-11 71.2 104 47.1
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.1e-10 70.1 234 31.2
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 2.1e-10 70.1 118 42.4
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 4.8e-10 68.9 104 46.2
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 4.8e-10 68.9 122 40.2
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 4.8e-10 68.9 104 44.2
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.1e-09 67.8 210 31.0
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 1.4e-09 67.4 210 33.8
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 2.4e-09 66.6 247 32.0
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 3.1e-09 66.2 210 33.3
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 3.1e-09 66.2 212 31.1
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 4.0e-09 65.9 46 65.2
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 4.0e-09 65.9 45 71.1
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 1.2e-08 64.3 92 44.6
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 4.5e-08 62.4 201 30.8
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 4.5e-08 62.4 201 30.8
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 4.5e-08 62.4 201 30.8
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 5.8e-08 62.0 204 32.4
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 1.3e-07 60.8 48 60.4
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.3e-07 60.8 126 34.9
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 2.9e-07 59.7 63 47.6
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.9e-07 59.7 161 41.6
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 4.9e-07 58.9 212 35.4
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 6.5e-07 58.5 208 32.2
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 1.1e-06 57.8 204 32.8
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 1.1e-06 57.8 203 32.0
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 1.9e-06 57.0 196 34.2
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 2.5e-06 56.6 217 30.4
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 3.2e-06 56.2 204 32.4
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 9.3e-06 54.7 211 31.3


User provided reference genes

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