Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.1e-267 926.0 470 100.0
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 4.9e-101 372.5 311 69.1
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-75 287.7 304 58.9
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 2.7e-75 287.0 297 60.3
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.3e-73 278.9 296 58.1
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-72 277.7 329 54.4
RhsimUnG0023000 Rhododendron simsii HOM05D001562 ORTHO05D001437 1.0e-50 205.3 112 90.2
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 2.1e-48 197.6 291 45.4
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 4.5e-46 189.9 291 46.0
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.9e-41 174.5 300 44.0
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 7.4e-41 172.6 293 43.3
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 1.1e-36 158.7 292 39.0
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 1.4e-31 141.7 297 35.7
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 9.1e-31 139.0 297 35.7
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 3.4e-30 137.1 310 35.5
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 4.5e-30 136.7 297 36.0
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.7e-29 134.8 148 56.1
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 7.2e-28 129.4 301 36.5
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.2e-27 128.6 310 34.8
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 3.6e-27 127.1 308 36.0
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-26 122.9 298 33.9
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 6.7e-26 122.9 298 33.9
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 8.8e-26 122.5 309 33.0
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 2.6e-25 120.9 330 34.2
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 7.4e-25 119.4 305 32.5
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 9.7e-25 119.0 298 35.2
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 2.8e-24 117.5 308 36.4
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 3.7e-24 117.1 210 41.0
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 6.3e-24 116.3 307 33.6
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 8.2e-24 115.9 307 33.6
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 2.4e-23 114.4 319 32.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 5.3e-23 113.2 297 34.0
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 7.0e-23 112.8 309 33.0
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 7.0e-23 112.8 309 33.7
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 9.1e-23 112.5 296 33.8
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 4.5e-22 110.2 294 32.3
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.0e-21 109.0 323 31.9
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.3e-21 108.6 315 33.3
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 2.5e-20 104.4 297 32.3
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 2.5e-20 104.4 302 31.8
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 3.2e-20 104.0 285 30.9
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 9.4e-20 102.4 302 31.8
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.0e-18 99.0 332 29.2
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 1.8e-18 98.2 167 41.3
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 3.0e-18 97.4 296 31.4
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 5.2e-18 96.7 301 31.9
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 5.2e-18 96.7 211 33.6
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 8.8e-18 95.9 291 27.8
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 2.0e-17 94.7 291 30.6
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.3e-17 94.0 293 29.7
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 3.3e-17 94.0 290 29.3
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 7.4e-17 92.8 309 29.4
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 7.4e-17 92.8 310 30.3
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 9.7e-17 92.4 285 29.5
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.3e-16 92.0 314 30.9
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 2.2e-16 91.3 290 32.8
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 2.2e-16 91.3 308 32.1
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.8e-16 90.1 289 29.8
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 4.8e-16 90.1 294 31.0
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 6.3e-16 89.7 289 30.4
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.4e-15 88.6 327 29.7
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 3.1e-15 87.4 290 31.0
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 4.1e-15 87.0 282 29.1
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 7.0e-15 86.3 290 28.6
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 7.0e-15 86.3 296 30.1
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 9.1e-15 85.9 321 29.3
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 9.1e-15 85.9 202 37.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 1.2e-14 85.5 289 30.1
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.6e-14 85.1 304 30.6
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 2.6e-14 84.3 291 29.6
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 4.5e-14 83.6 290 29.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 5.9e-14 83.2 294 29.3
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.2e-13 81.3 246 30.1
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 2.2e-13 81.3 301 28.9
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.2e-13 81.3 318 28.6
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 2.9e-13 80.9 291 25.4
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 5.0e-13 80.1 206 31.6
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 5.0e-13 80.1 290 28.3
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 6.5e-13 79.7 246 31.3
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 8.5e-13 79.3 294 28.2
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.5e-12 78.6 303 28.7
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 5.5e-12 76.6 97 47.4
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 7.2e-12 76.3 279 29.7
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 2.1e-11 74.7 292 26.4
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.7e-11 74.3 304 27.6
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.7e-11 74.3 290 31.7
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 6.1e-11 73.2 192 33.3
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.0e-10 72.4 271 31.4
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 1.0e-10 72.4 283 27.9
Rhsim06G0014100 Rhododendron simsii HOM05D000150 ORTHO05D338406 1.8e-10 71.6 39 89.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 3.0e-10 70.9 205 30.2
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-10 70.9 205 30.2
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.0e-10 70.9 205 30.2
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 3.0e-10 70.9 294 29.3
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 3.0e-10 70.9 210 32.4
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.0e-10 70.5 264 29.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 6.8e-10 69.7 263 30.0
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.2e-09 68.9 278 28.8
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.5e-09 68.6 295 28.1
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 2.6e-09 67.8 306 28.4
Rhsim06G0013600 Rhododendron simsii HOM05D000686 ORTHO05D000512 2.6e-09 67.8 105 45.7
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.6e-09 67.8 186 32.3
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 3.4e-09 67.4 251 30.3
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 9.8e-09 65.9 316 29.7
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.3e-08 65.5 311 27.0
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 4.8e-08 63.5 145 35.9
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 8.3e-08 62.8 298 27.5
HanXRQChr13g0386961 Helianthus annuus HOM05D000686 ORTHO05D000512 8.3e-08 62.8 39 79.5
vmacro23218 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 1.1e-07 62.4 40 75.0
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 1.4e-07 62.0 43 72.1
Actinidia21467 Actinidia chinensis HOM05D002716 ORTHO05D003324 2.4e-07 61.2 55 58.2
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 2.4e-07 61.2 137 34.3
Cfa005267 Carpinus fangiana HOM05D000686 ORTHO05D000512 3.1e-07 60.8 40 72.5
Lsat_1_v5_gn_8_29540 Lactuca sativa HOM05D000686 ORTHO05D000512 4.1e-07 60.5 40 72.5
vmacro21858 Vaccinium macrocarpon HOM05D000686 ORTHO05D000512 4.1e-07 60.5 40 72.5
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 5.4e-07 60.1 150 31.3
Actinidia15455 Actinidia chinensis HOM05D000686 ORTHO05D000512 7.0e-07 59.7 40 70.0
Actinidia17012 Actinidia chinensis HOM05D000686 ORTHO05D000512 7.0e-07 59.7 40 70.0
Actinidia39158 Actinidia chinensis HOM05D002716 ORTHO05D003324 7.0e-07 59.7 55 56.4
HanXRQChr13g0386971 Helianthus annuus HOM05D000686 ORTHO05D000512 7.0e-07 59.7 39 74.4
Cfa005264 Carpinus fangiana HOM05D000686 ORTHO05D000512 9.1e-07 59.3 50 60.0
Ciclev10028549m.g Citrus clementina HOM05D000686 ORTHO05D000512 9.1e-07 59.3 36 80.6
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 9.1e-07 59.3 169 33.1
GSVIVG01023999001 Vitis vinifera HOM05D000686 ORTHO05D000512 9.1e-07 59.3 38 76.3
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.2e-06 58.9 306 26.5
Actinidia21471 Actinidia chinensis HOM05D000686 ORTHO05D000512 1.6e-06 58.5 40 70.0
Actinidia39162 Actinidia chinensis HOM05D000686 ORTHO05D000512 1.6e-06 58.5 40 70.0
Cfa004819 Carpinus fangiana HOM05D000686 ORTHO05D000512 1.6e-06 58.5 40 70.0
FAN24G0033 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.6e-06 58.5 38 71.1
Lj4A800T38 Lonicera japonica HOM05D000686 ORTHO05D000512 1.6e-06 58.5 40 70.0
Oeu033625.2 Olea europaea HOM05D000686 ORTHO05D000512 1.6e-06 58.5 63 49.2
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.0e-06 58.2 295 26.1
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.0e-06 58.2 310 29.7
CANSAT25G3648 Cannabis sativa HOM05D000686 ORTHO05D000512 2.0e-06 58.2 38 65.8
CAN.G1517.2 Capsicum annuum HOM05D000686 ORTHO05D000512 2.0e-06 58.2 40 67.5
Ciclev10028550m.g Citrus clementina HOM05D000686 ORTHO05D000512 2.0e-06 58.2 40 67.5
Dinv14119 Davidia involucrata HOM05D002716 ORTHO05D003324 2.0e-06 58.2 40 67.5
Oeu006692.1 Olea europaea HOM05D000686 ORTHO05D000512 2.0e-06 58.2 41 65.9
RcHm_v2.0_Chr6g0278591 Rosa chinensis HOM05D000686 ORTHO05D000512 2.0e-06 58.2 39 69.2
Sabra04G0118800 Salix brachista HOM05D000686 ORTHO05D000512 2.0e-06 58.2 40 72.5
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 2.0e-06 58.2 66 53.0
GSVIVG01008760001 Vitis vinifera HOM05D000686 ORTHO05D000512 2.0e-06 58.2 40 72.5
CiPaw.05G084000 Carya illinoinensis HOM05D000686 ORTHO05D000512 2.7e-06 57.8 39 71.8
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 2.7e-06 57.8 38 68.4
Nitab4.5_0000498g0040 Nicotiana tabacum HOM05D000686 ORTHO05D000512 2.7e-06 57.8 38 73.7
SalBow6G5550 Salvia bowleyana HOM05D000686 ORTHO05D000512 2.7e-06 57.8 40 72.5
PGSC0003DMG400015352 Solanum tuberosum HOM05D000686 ORTHO05D000035 2.7e-06 57.8 57 56.1
Aqoxy1G02090 Aquilegia oxysepala HOM05D000686 ORTHO05D000512 3.5e-06 57.4 38 71.1
CSS0016077 Camellia sinensis var. sinensis HOM05D000686 ORTHO05D000512 3.5e-06 57.4 35 77.1
Haze_02118 Corylus avellana HOM05D000686 ORTHO05D000512 3.5e-06 57.4 40 67.5
Migut.N03183 Erythranthe guttata HOM05D000686 ORTHO05D000512 3.5e-06 57.4 35 77.1
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 3.5e-06 57.4 187 30.5
Nitab4.5_0001936g0040 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.5e-06 57.4 40 65.0
Nitab4.5_0011740g0010 Nicotiana tabacum HOM05D000686 ORTHO05D000512 3.5e-06 57.4 40 67.5
Rhsim05G0053600 Rhododendron simsii HOM05D000686 ORTHO05D000512 3.5e-06 57.4 40 67.5
Cfa005271 Carpinus fangiana HOM05D000686 ORTHO05D000512 4.5e-06 57.0 40 67.5
DCAR_009507 Daucus carota HOM05D000686 ORTHO05D000512 4.5e-06 57.0 59 49.2
Eucgr.I01444 Eucalyptus grandis HOM05D000686 ORTHO05D000512 4.5e-06 57.0 38 73.7
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 4.5e-06 57.0 64 51.6
MD05G1123600 Malus domestica HOM05D000686 ORTHO05D000512 4.5e-06 57.0 38 68.4
Peaxi162Scf00064g00740 Petunia axillaris HOM05D000686 ORTHO05D000512 4.5e-06 57.0 38 71.1
QL11p051215 Quercus lobata HOM05D000686 ORTHO05D000512 4.5e-06 57.0 40 67.5
Sabra04G0118700 Salix brachista HOM05D000686 ORTHO05D000512 4.5e-06 57.0 40 72.5
SalBow6G4814 Salvia bowleyana HOM05D000686 ORTHO05D000512 4.5e-06 57.0 40 70.0
VMungo0720G0504 Vigna mungo HOM05D000686 ORTHO05D000512 4.5e-06 57.0 38 71.1
CiPaw.05G084200 Carya illinoinensis HOM05D000686 ORTHO05D000512 5.9e-06 56.6 40 65.0
Cc07_g14730 Coffea canephora HOM05D000686 ORTHO05D000512 5.9e-06 56.6 35 80.0
Haze_02122 Corylus avellana HOM05D000686 ORTHO05D000512 5.9e-06 56.6 40 67.5
MELO3C013339.2 Cucumis melo HOM05D000686 ORTHO05D000512 5.9e-06 56.6 39 69.2
MELO3C013342.2 Cucumis melo HOM05D000686 ORTHO05D000512 5.9e-06 56.6 40 67.5
Eucgr.I01445 Eucalyptus grandis HOM05D000686 ORTHO05D000512 5.9e-06 56.6 38 71.1
QL11p051221 Quercus lobata HOM05D000686 ORTHO05D000512 5.9e-06 56.6 43 62.8
Rhsim06G0013700 Rhododendron simsii HOM05D000686 ORTHO05D000512 5.9e-06 56.6 40 70.0
Cc01_g06760 Coffea canephora HOM05D000686 ORTHO05D000512 7.7e-06 56.2 35 77.1
Glyma.10G282200 Glycine max HOM05D000686 ORTHO05D000512 7.7e-06 56.2 54 55.6
Glyma.20G105500 Glycine max HOM05D000686 ORTHO05D000512 7.7e-06 56.2 38 68.4
HanXRQChr13g0386951 Helianthus annuus HOM05D000686 ORTHO05D000512 7.7e-06 56.2 39 71.8
Lj5g0020128 Lotus japonicus HOM05D000686 ORTHO05D000512 7.7e-06 56.2 59 52.5
Nitab4.5_0000192g0200 Nicotiana tabacum HOM05D000686 ORTHO05D000512 7.7e-06 56.2 62 53.2
RcHm_v2.0_Chr6g0278701 Rosa chinensis HOM05D000686 ORTHO05D000512 7.7e-06 56.2 38 68.4
Solyc12g089385.1 Solanum lycopersicum HOM05D000686 ORTHO05D000512 7.7e-06 56.2 40 65.0
Sopen12g031240 Solanum pennellii HOM05D000686 ORTHO05D000512 7.7e-06 56.2 40 65.0
PGSC0003DMG400029330 Solanum tuberosum HOM05D000686 ORTHO05D000512 7.7e-06 56.2 40 65.0


User provided reference genes

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