Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0010100 Rhododendron simsii HOM05D001062 ORTHO05D000884 1.3e-160 569.7 286 100.0
Rhsim03G0075600 Rhododendron simsii HOM05D001062 ORTHO05D000884 1.2e-38 164.5 240 50.8
CSS0030846 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 2.3e-37 160.2 243 48.1
Dinv09059 Davidia involucrata HOM05D001062 ORTHO05D000884 3.0e-37 159.8 241 47.7
Prupe.4G113700 Prunus persica HOM05D001062 ORTHO05D000884 5.2e-37 159.1 243 49.0
Nitab4.5_0000138g0060 Nicotiana tabacum HOM05D001062 ORTHO05D000884 3.3e-36 156.4 241 48.1
Cc09_g05850 Coffea canephora HOM05D001062 ORTHO05D000884 7.4e-36 155.2 244 47.5
Nitab4.5_0010569g0010 Nicotiana tabacum HOM05D001062 ORTHO05D000884 7.4e-36 155.2 241 47.7
Rhsim06G0010200 Rhododendron simsii HOM05D001062 ORTHO05D000884 2.2e-35 153.7 218 49.5
QL11p013748 Quercus lobata HOM05D001062 ORTHO05D000884 3.7e-35 152.9 244 48.4
HanXRQChr12g0381561 Helianthus annuus HOM05D001062 ORTHO05D000884 3.1e-34 149.8 240 45.4
Solyc02g031830.1 Solanum lycopersicum HOM05D001062 ORTHO05D000884 7.0e-34 148.7 241 46.5
Sopen02g010120 Solanum pennellii HOM05D001062 ORTHO05D000884 7.0e-34 148.7 241 46.5
PGSC0003DMG400017863 Solanum tuberosum HOM05D001062 ORTHO05D000884 1.2e-33 147.9 241 46.5
Lj4g0011148 Lotus japonicus HOM05D001062 ORTHO05D000884 1.6e-33 147.5 243 44.9
Oeu056042.1 Olea europaea HOM05D001062 ORTHO05D000884 2.0e-33 147.1 244 45.9
Duzib132G1009 Durio zibethinus HOM05D001062 ORTHO05D000884 2.6e-33 146.7 244 45.1
Lsat_1_v5_gn_3_107201 Lactuca sativa HOM05D001062 ORTHO05D000884 2.6e-33 146.7 231 45.9
TAR624G0548 Trochodendron aralioides HOM05D001062 ORTHO05D000884 2.6e-33 146.7 284 40.8
FAN21G1983 Fragaria x ananassa HOM05D001062 ORTHO05D000884 4.5e-33 146.0 239 47.3
FvH4_3g12480 Fragaria vesca HOM05D001062 ORTHO05D000884 5.9e-33 145.6 239 47.3
Nn7g38231 Nelumbo nucifera HOM05D001062 ORTHO05D000884 5.9e-33 145.6 243 44.9
Oeu058936.1 Olea europaea HOM05D001062 ORTHO05D000884 5.9e-33 145.6 243 44.9
CsaV3_1G010230 Cucumis sativus L. HOM05D001062 ORTHO05D000884 7.7e-33 145.2 243 43.2
DCAR_003773 Daucus carota HOM05D001062 ORTHO05D000884 7.7e-33 145.2 226 46.5
FAN25G0928 Fragaria x ananassa HOM05D001062 ORTHO05D000884 7.7e-33 145.2 239 47.3
SGA_v2.0_scaffold175G39354 Striga asiatica HOM05D001062 ORTHO05D000884 1.0e-32 144.8 241 44.4
Duzib248G0137 Durio zibethinus HOM05D001062 ORTHO05D000884 1.3e-32 144.4 246 45.9
Migut.M01989 Erythranthe guttata HOM05D001062 ORTHO05D000884 1.3e-32 144.4 240 44.6
THA.LOC104806216 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 1.3e-32 144.4 307 40.1
Haze_06094 Corylus avellana HOM05D001062 ORTHO05D000884 1.7e-32 144.1 244 46.3
MELO3C002411.2 Cucumis melo HOM05D001062 ORTHO05D000884 1.7e-32 144.1 243 43.2
ClCG03G004280 Citrullus lanatus HOM05D001062 ORTHO05D000884 2.2e-32 143.7 243 42.0
RcHm_v2.0_Chr5g0020421 Rosa chinensis HOM05D001062 ORTHO05D000884 2.2e-32 143.7 243 46.5
SGA_v2.0_scaffold298G47690 Striga asiatica HOM05D001062 ORTHO05D000884 2.2e-32 143.7 240 44.6
Gorai.005G267600 Gossypium raimondii HOM05D001062 ORTHO05D000884 3.8e-32 142.9 244 44.7
TWI38G2206 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 3.8e-32 142.9 245 43.3
Gohir.D02G239300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 5.0e-32 142.5 244 44.7
MSTRG.7598 Avicennia marina HOM05D001062 ORTHO05D000884 6.5e-32 142.1 237 46.8
PGR031G2520 Punica granatum HOM05D001062 ORTHO05D000884 6.5e-32 142.1 243 44.4
Sed0024381 Sechium edule HOM05D001062 ORTHO05D000884 6.5e-32 142.1 243 44.0
CANSAT64G1264 Cannabis sativa HOM05D001062 ORTHO05D000884 8.5e-32 141.7 243 43.6
TAR626G0745 Trochodendron aralioides HOM05D001062 ORTHO05D000884 1.1e-31 141.4 243 43.2
CSS0000691 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 1.5e-31 141.0 226 46.9
Thhalv10026779m.g Eutrema salsugineum HOM05D001062 ORTHO05D000884 1.5e-31 141.0 244 45.1
Manes.16G055300 Manihot esculenta HOM05D001062 ORTHO05D000884 1.5e-31 141.0 244 43.9
THA.LOC104811630 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 3.2e-31 139.8 244 44.7
Potri.012G125800 Populus trichocarpa HOM05D001062 ORTHO05D000884 4.2e-31 139.4 243 45.3
MSTRG.16359 Avicennia marina HOM05D001062 ORTHO05D000884 7.2e-31 138.7 240 44.6
Cpa.g.sc30.143 Carica papaya HOM05D001062 ORTHO05D000884 7.2e-31 138.7 249 43.8
CAN.G79.43 Capsicum annuum HOM05D001062 ORTHO05D000884 1.2e-30 137.9 241 44.4
Cfa000695 Carpinus fangiana HOM05D001062 ORTHO05D000884 1.2e-30 137.9 243 45.7
Potri.015G125600 Populus trichocarpa HOM05D001062 ORTHO05D000884 1.6e-30 137.5 241 44.8
Glyma.05G131300 Glycine max HOM05D001062 ORTHO05D000884 2.1e-30 137.1 243 43.6
CiPaw.09G075600 Carya illinoinensis HOM05D001062 ORTHO05D000884 3.6e-30 136.3 244 44.3
Thecc.02G007900 Theobroma cacao HOM05D001062 ORTHO05D000884 4.7e-30 136.0 244 43.0
TPR.G27890 Trifolium pratense HOM05D001062 ORTHO05D000884 6.1e-30 135.6 242 43.8
CARHR226710 Cardamine hirsuta HOM05D001062 ORTHO05D000884 1.4e-29 134.4 243 43.6
COL.COLO4_07172 Corchorus olitorius HOM05D001062 ORTHO05D000884 1.8e-29 134.0 245 42.4
CARHR177950 Cardamine hirsuta HOM05D001062 ORTHO05D000884 2.3e-29 133.7 243 42.4
Sabra15G0139900 Salix brachista HOM05D001062 ORTHO05D000884 3.0e-29 133.3 241 43.6
Aa31LG6G2370 Aethionema arabicum HOM05D001062 ORTHO05D000884 4.0e-29 132.9 245 41.2
BcaNung01742 Brassica carinata HOM05D001062 ORTHO05D000884 4.0e-29 132.9 241 43.6
Medtr7g021620 Medicago truncatula HOM05D001062 ORTHO05D000884 4.0e-29 132.9 242 44.2
Phvul.002G191400 Phaseolus vulgaris HOM05D001062 ORTHO05D000884 6.7e-29 132.1 242 43.8
BcaC06g34497 Brassica carinata HOM05D001062 ORTHO05D000884 3.3e-28 129.8 245 42.4
C07p27860 Brassica napus HOM05D001062 ORTHO05D000884 3.3e-28 129.8 245 42.4
BolC7t43317H Brassica oleracea HOM05D001062 ORTHO05D000884 3.3e-28 129.8 245 42.4
Carub.0008s0339 Capsella rubella HOM05D001062 ORTHO05D000884 3.3e-28 129.8 243 42.4
Medtr4g096890 Medicago truncatula HOM05D001062 ORTHO05D000884 3.3e-28 129.8 242 43.4
BcaC06g31581 Brassica carinata HOM05D001062 ORTHO05D000884 4.4e-28 129.4 242 42.6
A06p46830 Brassica napus HOM05D001062 ORTHO05D000884 1.3e-27 127.9 245 42.0
Gorai.008G048700 Gossypium raimondii HOM05D001062 ORTHO05D000884 1.7e-27 127.5 245 41.2
Lj1P1146T20 Lonicera japonica HOM05D001062 ORTHO05D000884 1.7e-27 127.5 223 43.5
AT1G31130 Arabidopsis thaliana HOM05D001062 ORTHO05D000884 2.8e-27 126.7 245 42.0
Sp2g09690 Schrenkiella parvula HOM05D001062 ORTHO05D000884 2.8e-27 126.7 244 41.8
THA.LOC104814356 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 2.8e-27 126.7 245 41.6
Ah.08g212850 Amaranthus hybridus HOM05D001062 ORTHO05D000884 3.7e-27 126.3 243 42.0
AT4G19950 Arabidopsis thaliana HOM05D001062 ORTHO05D000884 3.7e-27 126.3 243 42.8
BraA06t27555Z Brassica rapa HOM05D001062 ORTHO05D000884 3.7e-27 126.3 245 41.6
Carub.0007s2120 Capsella rubella HOM05D001062 ORTHO05D000884 3.7e-27 126.3 240 42.5
PSO675G1304 Papaver somniferum HOM05D001062 ORTHO05D000884 3.7e-27 126.3 243 42.4
unitig_92.g28189 Utricularia gibba HOM05D001062 ORTHO05D000884 3.7e-27 126.3 241 40.2
PSO675G0698 Papaver somniferum HOM05D001062 ORTHO05D000884 1.1e-26 124.8 243 42.0
GSVIVG01012111001 Vitis vinifera HOM05D001062 ORTHO05D000884 1.8e-26 124.0 241 41.9
Aa31LG9G8320 Aethionema arabicum HOM05D001062 ORTHO05D000884 4.1e-26 122.9 309 36.6
Sp1g26960 Schrenkiella parvula HOM05D001062 ORTHO05D000884 4.1e-26 122.9 245 40.8
THA.LOC104812705 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 4.1e-26 122.9 245 40.0
Lj2P345T17 Lonicera japonica HOM05D001062 ORTHO05D000884 5.3e-26 122.5 222 42.3
Sc17g0004270 Simmondsia chinensis HOM05D001062 ORTHO05D000884 5.3e-26 122.5 234 42.7
Thhalv10008216m.g Eutrema salsugineum HOM05D001062 ORTHO05D000884 9.1e-26 121.7 245 41.6
Gohir.A12G047300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 9.1e-26 121.7 244 39.8
AL8G14610 Arabidopsis lyrata HOM05D001062 ORTHO05D000884 2.0e-25 120.6 243 39.5
AL8G14640 Arabidopsis lyrata HOM05D001062 ORTHO05D000884 2.0e-25 120.6 243 39.5
Carub.0001s2953 Capsella rubella HOM05D001062 ORTHO05D000884 2.7e-25 120.2 245 41.2
Thhalv10001106m.g Eutrema salsugineum HOM05D001062 ORTHO05D000884 2.7e-25 120.2 244 41.4
A09p35100 Brassica napus HOM05D001062 ORTHO05D000884 3.5e-25 119.8 245 40.8
BraA09t39042Z Brassica rapa HOM05D001062 ORTHO05D000884 3.5e-25 119.8 245 40.8
CARHR030610 Cardamine hirsuta HOM05D001062 ORTHO05D000884 3.5e-25 119.8 245 40.0
AT5G44860 Arabidopsis thaliana HOM05D001062 ORTHO05D000884 7.7e-25 118.6 243 39.5
Hma1.2p1_0181F.1_g080060 Hydrangea macrophylla HOM05D001062 ORTHO05D000884 7.7e-25 118.6 169 52.7
Atru.chr10.453 Acer truncatum HOM05D001062 ORTHO05D000884 1.3e-24 117.9 307 35.8
BcaC05g27144 Brassica carinata HOM05D001062 ORTHO05D000884 1.3e-24 117.9 245 40.8
C05p30280 Brassica napus HOM05D001062 ORTHO05D000884 1.3e-24 117.9 245 40.8
BolC5t31769H Brassica oleracea HOM05D001062 ORTHO05D000884 1.3e-24 117.9 245 40.8
Nitab4.5_0007933g0010 Nicotiana tabacum HOM05D001062 ORTHO05D000884 1.3e-24 117.9 234 40.2
THA.LOC104798556 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 1.7e-24 117.5 306 35.9
Aa31LG2G15070 Aethionema arabicum HOM05D001062 ORTHO05D000884 2.2e-24 117.1 245 40.0
BcaNung01744 Brassica carinata HOM05D001062 ORTHO05D000884 2.9e-24 116.7 237 41.8
A07p09480 Brassica napus HOM05D001062 ORTHO05D000884 2.9e-24 116.7 246 41.1
C07p14580 Brassica napus HOM05D001062 ORTHO05D000884 3.8e-24 116.3 246 40.7
BolC7t41957H Brassica oleracea HOM05D001062 ORTHO05D000884 3.8e-24 116.3 246 40.7
BraA07t28744Z Brassica rapa HOM05D001062 ORTHO05D000884 3.8e-24 116.3 246 41.1
BcaB07g32772 Brassica carinata HOM05D001062 ORTHO05D000884 8.5e-24 115.2 245 40.4
C01p13950 Brassica napus HOM05D001062 ORTHO05D000884 9.4e-23 111.7 233 40.8
BolC1t01362H Brassica oleracea HOM05D001062 ORTHO05D000884 9.4e-23 111.7 233 40.8
Lalb_Chr13g0292271 Lupinus albus HOM05D001062 ORTHO05D000884 9.4e-23 111.7 235 37.0
Peaxi162Scf01110g00025 Petunia axillaris HOM05D001062 ORTHO05D000884 1.6e-22 110.9 244 36.5
Nitab4.5_0001476g0080 Nicotiana tabacum HOM05D001062 ORTHO05D000884 2.7e-22 110.2 234 39.3
Psat7g089240 Pisum sativum HOM05D001062 ORTHO05D000884 3.6e-22 109.8 203 43.8
MBI02_g35824_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 6.1e-22 109.0 284 35.2
BcaC07g37775 Brassica carinata HOM05D001062 ORTHO05D000884 8.0e-22 108.6 245 38.8
BolC8t48165H Brassica oleracea HOM05D001062 ORTHO05D000884 8.0e-22 108.6 245 38.8
DCAR_001296 Daucus carota HOM05D001062 ORTHO05D000884 1.4e-21 107.8 235 39.1
CAN.G1551.4 Capsicum annuum HOM05D001062 ORTHO05D000884 2.3e-21 107.1 234 36.8
Solyc01g080910.2 Solanum lycopersicum HOM05D001062 ORTHO05D000884 2.3e-21 107.1 245 35.5
Peaxi162Scf00198g00075 Petunia axillaris HOM05D001062 ORTHO05D000884 5.2e-21 105.9 235 38.3
Sopen01g032500 Solanum pennellii HOM05D001062 ORTHO05D000884 2.0e-20 104.0 243 35.4
PGSC0003DMG400001822 Solanum tuberosum HOM05D001062 ORTHO05D000884 3.4e-20 103.2 236 36.9
HPP92_000844 Vanilla planifolia HOM05D001062 ORTHO05D000884 2.8e-19 100.1 219 39.3
Aa31LG2G15080 Aethionema arabicum HOM05D001062 ORTHO05D000884 9.1e-18 95.1 291 33.0
BcaB03g13806 Brassica carinata HOM05D001062 ORTHO05D000884 1.2e-17 94.7 246 37.8
Ciclev10016293m.g Citrus clementina HOM05D001062 ORTHO05D000884 3.8e-16 89.7 241 34.4
SHI17665 Sapria himalayana HOM05D001062 ORTHO05D000884 2.5e-15 87.0 213 38.5
Lalb_Chr07g0188541 Lupinus albus HOM05D001062 ORTHO05D000884 7.2e-15 85.5 233 34.3
A08p10720 Brassica napus HOM05D001062 ORTHO05D000884 6.1e-14 82.4 239 34.3
RhsimUnG0225900 Rhododendron simsii HOM05D001062 ORTHO05D012333 6.1e-14 82.4 172 41.3
AL7G33970 Arabidopsis lyrata HOM05D001062 ORTHO05D000884 3.4e-12 76.6 163 41.7
RhsimUnG0227000 Rhododendron simsii HOM05D001062 ORTHO05D000884 9.8e-12 75.1 169 37.9
SEGI_26894 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 3.7e-11 73.2 179 36.9
Aqoxy7G01337 Aquilegia oxysepala HOM05D001062 ORTHO05D000884 4.9e-11 72.8 216 34.7
TWI15G0161 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 4.9e-11 72.8 142 41.5
MD10G1230900 Malus domestica HOM05D001062 ORTHO05D000884 1.4e-10 71.2 115 47.0
Sp7g18390 Schrenkiella parvula HOM05D001062 ORTHO05D000884 2.7e-09 67.0 115 43.5
unitig_37.g12054 Utricularia gibba HOM05D001062 ORTHO05D000884 2.7e-09 67.0 121 40.5
Gohir.D12G046101 Gossypium hirsutum HOM05D001062 ORTHO05D000884 7.8e-09 65.5 116 41.4
Os01g0800300 Oryza sativa ssp. japonica HOM05D001062 ORTHO05D000884 7.8e-09 65.5 223 30.9
Actinidia22415 Actinidia chinensis HOM05D001062 ORTHO05D000884 1.7e-08 64.3 63 55.6
Aqoxy3G02734 Aquilegia oxysepala HOM05D001062 ORTHO05D000884 1.7e-08 64.3 229 30.6
SalBow7G3905 Salvia bowleyana HOM05D001062 ORTHO05D000884 1.5e-07 61.2 99 43.4
Rhsim03G0021600 Rhododendron simsii HOM05D001062 ORTHO05D000884 7.3e-07 58.9 165 36.4
Nn3g16144 Nelumbo nucifera HOM05D001062 ORTHO05D000884 9.5e-07 58.5 246 29.7
Nn3g17062 Nelumbo nucifera HOM05D001062 ORTHO05D000884 9.5e-07 58.5 246 29.7
Migut.L00968 Erythranthe guttata HOM05D001062 ORTHO05D000884 8.0e-06 55.5 266 28.2


User provided reference genes

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