Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.8e-257 891.0 436 100.0
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.3e-217 759.6 478 79.7
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.2e-209 732.3 432 80.8
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.5e-200 703.0 432 78.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 1.5e-200 703.0 433 78.3
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 7.0e-187 657.5 417 76.3
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.6e-186 656.4 449 71.7
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 4.6e-186 654.8 417 74.3
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 6.6e-185 651.0 383 81.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 4.3e-184 648.3 437 72.1
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 5.6e-184 647.9 437 72.1
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 1.4e-182 643.3 416 74.8
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 2.6e-181 639.0 437 72.8
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 3.4e-181 638.6 411 74.5
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.4e-181 638.3 417 73.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 9.8e-181 637.1 417 73.1
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.7e-180 636.3 410 74.6
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-180 636.0 412 75.0
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.2e-180 636.0 417 72.9
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 6.4e-180 634.4 426 71.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 8.3e-180 634.0 421 73.4
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 8.3e-180 634.0 407 74.7
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 5.4e-179 631.3 414 75.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 5.4e-179 631.3 435 70.8
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 5.4e-179 631.3 418 72.7
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.6e-178 629.8 397 75.3
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.6e-178 629.8 409 73.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 2.1e-178 629.4 392 76.0
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 3.5e-178 628.6 408 73.8
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.6e-178 628.2 429 71.6
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.0e-178 627.9 423 71.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 7.8e-178 627.5 426 72.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.3e-177 626.7 432 70.8
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 5.1e-177 624.8 418 72.5
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.5e-176 623.2 438 71.2
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.3e-176 621.7 400 73.8
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 7.3e-176 620.9 434 71.0
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 3.6e-175 618.6 419 69.9
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 4.7e-175 618.2 428 70.8
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 6.2e-175 617.8 416 71.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.4e-174 616.7 452 68.4
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.1e-174 615.5 417 73.6
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 6.8e-174 614.4 403 73.7
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 2.0e-173 612.8 400 72.8
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.6e-173 612.5 390 75.6
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 2.6e-173 612.5 425 70.8
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 4.4e-173 611.7 426 69.7
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.9e-173 610.5 427 69.8
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 9.9e-173 610.5 391 73.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.7e-172 609.8 400 72.8
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.7e-172 608.6 427 69.6
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 4.9e-172 608.2 433 68.8
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 6.4e-172 607.8 420 70.2
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 8.3e-172 607.4 429 70.2
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 7.1e-171 604.4 400 73.5
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 9.2e-171 604.0 427 69.6
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.2e-170 603.6 416 71.6
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.6e-170 603.2 434 68.9
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 3.5e-170 602.1 399 73.2
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 4.6e-170 601.7 395 73.2
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.7e-169 599.7 419 69.5
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.3e-169 599.4 441 68.0
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.3e-169 599.4 385 72.5
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 5.1e-169 598.2 424 69.1
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 8.6e-169 597.4 426 68.3
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 1.9e-168 596.3 419 69.2
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.2e-167 593.6 377 74.3
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 2.8e-167 592.4 435 69.2
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 8.1e-167 590.9 422 67.5
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-166 590.5 459 65.4
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 2.4e-166 589.3 418 68.9
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 5.2e-166 588.2 418 68.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 8.9e-166 587.4 413 68.8
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 8.9e-166 587.4 413 68.8
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.2e-165 587.0 385 72.2
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 2.0e-165 586.3 426 67.6
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 5.8e-165 584.7 412 68.9
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 4.2e-163 578.6 411 68.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.2e-162 577.0 390 70.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.6e-162 576.6 429 68.3
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 4.6e-162 575.1 439 64.5
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.0e-161 573.9 394 69.8
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 2.3e-161 572.8 429 68.1
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.7e-161 570.9 385 69.6
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.7e-161 570.9 419 65.6
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.9e-160 569.7 391 69.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 9.6e-160 567.4 429 66.2
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 3.6e-159 565.5 388 72.4
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.4e-158 563.5 450 64.2
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.8e-156 555.4 387 68.5
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 8.4e-156 554.3 379 70.4
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 9.3e-155 550.8 394 69.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 9.3e-155 550.8 381 69.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 8.7e-153 544.3 384 68.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 4.8e-151 538.5 440 61.4
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.8e-150 536.6 396 66.9
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.2e-149 533.9 338 72.8
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.1e-147 527.3 296 83.1
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.4e-147 526.2 359 70.2
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.1e-146 523.1 399 65.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.7e-143 512.3 424 63.4
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 2.9e-140 502.7 304 77.3
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.0e-137 494.2 387 63.6
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.0e-137 494.2 387 62.3
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.3e-137 493.8 388 61.9
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 4.3e-136 488.8 318 72.6
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.1e-135 486.5 409 59.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.3e-134 481.9 366 63.7
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.2e-133 480.7 327 69.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.8e-133 478.4 331 68.6
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.9e-132 476.1 327 68.2
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.6e-130 470.3 286 79.4
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.6e-130 468.8 327 67.6
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 3.2e-123 446.0 420 55.5
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.8e-119 433.0 276 74.3
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.7e-106 389.0 251 72.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.6e-104 383.3 301 60.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.7e-100 370.5 304 56.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 9.1e-94 348.2 221 72.4
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.2e-93 347.8 277 59.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.2e-91 339.3 408 44.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 4.9e-79 299.3 229 65.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 8.3e-79 298.5 197 71.6
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 4.7e-74 282.7 313 46.3
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.7e-69 266.9 242 53.3
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 8.6e-68 261.9 200 61.0
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 9.2e-62 241.9 225 57.8
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 4.3e-59 233.0 145 77.2
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 8.1e-58 228.8 168 63.7
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 4.0e-49 199.9 165 63.0
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-46 191.0 121 71.9
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.1e-44 183.0 135 61.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.6e-37 161.4 131 53.4
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 7.9e-37 159.1 291 36.8
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.4e-33 148.3 156 54.5
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 7.6e-32 142.5 181 42.5
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.0e-28 130.6 423 27.7
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 8.7e-28 129.0 92 69.6
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.6e-26 124.8 261 32.2
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.6e-24 117.5 110 53.6
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 3.9e-20 103.6 63 69.8
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 2.6e-16 90.9 58 72.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.8e-15 87.0 76 53.9
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-14 85.1 52 71.2
CSS0020606 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D109310 9.0e-09 65.9 49 59.2
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.5e-08 63.5 80 42.5
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.5e-08 63.5 80 42.5


User provided reference genes

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