Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.2e-110 403.3 216 100.0
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 1.0e-85 320.5 220 81.4
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 8.3e-72 274.2 220 70.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 8.3e-72 274.2 218 70.2
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 1.0e-66 257.3 227 65.2
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 4.0e-66 255.4 201 69.7
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 4.4e-57 225.3 221 60.6
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 6.4e-56 221.5 222 59.9
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 3.2e-55 219.2 211 60.2
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.6e-54 216.9 221 57.0
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 2.5e-52 209.5 205 58.5
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 1.2e-51 207.2 236 54.2
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 1.2e-49 200.7 193 59.1
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 7.6e-49 198.0 189 60.3
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 1.3e-48 197.2 215 54.9
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 2.9e-48 196.1 222 52.7
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.4e-47 193.0 214 55.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 9.2e-47 191.0 199 56.3
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.2e-46 190.7 215 52.6
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.6e-46 190.3 191 58.1
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.1e-46 189.9 201 53.2
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 7.8e-46 188.0 209 53.1
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 5.1e-45 185.3 204 53.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 1.5e-44 183.7 209 53.1
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 1.5e-44 183.7 203 54.2
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 2.5e-44 183.0 201 54.2
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.5e-44 183.0 200 55.0
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 2.5e-44 183.0 202 53.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 7.3e-44 181.4 220 50.9
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 9.6e-44 181.0 204 53.9
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 3.6e-43 179.1 221 50.2
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 3.6e-43 179.1 198 53.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 3.6e-43 179.1 206 49.0
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 1.4e-42 177.2 221 51.1
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.0e-42 175.6 208 51.9
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 5.2e-42 175.3 242 45.9
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 1.5e-41 173.7 191 51.8
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 2.6e-41 172.9 211 50.7
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.4e-41 172.2 216 50.0
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 4.4e-41 172.2 214 50.0
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 4.4e-41 172.2 195 54.9
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 5.8e-41 171.8 198 53.0
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 2.2e-40 169.9 169 60.4
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.9e-40 169.5 204 48.5
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 2.9e-40 169.5 230 48.3
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 6.4e-40 168.3 201 48.8
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.4e-40 168.3 191 52.9
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 8.4e-40 167.9 189 52.9
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 8.4e-40 167.9 220 45.9
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.1e-39 167.5 210 51.4
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 1.1e-39 167.5 167 59.9
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.9e-39 166.8 211 48.8
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 1.6e-38 163.7 200 49.0
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.1e-38 163.3 212 50.0
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.1e-38 163.3 200 50.5
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 3.5e-38 162.5 214 48.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 6.0e-38 161.8 200 48.0
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.8e-38 161.4 209 47.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 2.3e-37 159.8 210 47.6
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 3.0e-37 159.5 215 50.2
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 3.9e-37 159.1 214 48.6
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 3.9e-37 159.1 216 46.3
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 5.1e-37 158.7 189 50.3
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 8.7e-37 157.9 165 55.8
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 1.1e-36 157.5 214 48.1
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 1.5e-36 157.1 194 50.0
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.5e-36 157.1 220 44.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.9e-36 156.8 209 48.3
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.5e-36 156.4 204 49.5
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 4.3e-36 155.6 213 47.9
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 4.3e-36 155.6 213 47.9
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 4.3e-36 155.6 215 47.4
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.6e-36 155.2 196 51.0
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 5.6e-36 155.2 212 45.8
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 7.3e-36 154.8 214 47.2
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 9.6e-36 154.5 206 47.1
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.6e-35 153.7 210 44.3
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 1.6e-35 153.7 210 44.3
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-35 153.3 211 48.8
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 2.1e-35 153.3 209 45.5
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 2.8e-35 152.9 221 48.0
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 3.6e-35 152.5 189 50.3
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 4.8e-35 152.1 214 43.0
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 6.2e-35 151.8 173 53.8
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.1e-35 151.4 200 49.5
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 8.1e-35 151.4 228 43.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 8.1e-35 151.4 200 48.5
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 5.3e-34 148.7 205 48.3
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 5.3e-34 148.7 224 46.4
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 6.9e-34 148.3 209 45.5
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 9.0e-34 147.9 210 44.8
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 9.0e-34 147.9 199 46.2
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.2e-33 147.5 201 45.3
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 1.5e-33 147.1 208 46.6
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 3.4e-33 146.0 201 44.8
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 3.4e-33 146.0 203 47.3
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 3.4e-33 146.0 206 45.6
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 4.5e-33 145.6 202 46.5
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 5.8e-33 145.2 200 47.0
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 9.9e-33 144.4 266 39.8
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 1.3e-32 144.1 198 49.0
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.7e-32 143.7 211 46.4
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.7e-32 143.7 189 48.7
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 3.8e-32 142.5 203 46.3
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 9.3e-31 137.9 218 40.4
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 4.6e-30 135.6 266 39.1
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 7.9e-30 134.8 206 44.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 3.0e-29 132.9 189 46.6
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 9.9e-25 117.9 302 34.4
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.7e-24 117.1 192 40.6
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 4.3e-20 102.4 108 54.6
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.8e-18 97.1 224 33.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.6e-17 93.2 160 40.0
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 7.6e-17 91.7 163 38.7
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 2.2e-16 90.1 132 43.2
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 5.5e-15 85.5 78 53.8
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-14 84.3 112 45.5
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 5.7e-12 75.5 198 31.8
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 2.1e-11 73.6 75 53.3
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.1e-10 69.7 218 31.7
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.5e-09 67.4 140 36.4
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 2.0e-09 67.0 93 46.2
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 5.9e-09 65.5 120 37.5


User provided reference genes

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