Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 4.4e-165 584.7 329 100.0
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.1e-107 394.0 352 67.6
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 4.3e-88 328.9 335 60.3
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 7.9e-74 281.6 334 54.5
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 8.5e-52 208.4 334 45.8
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 1.2e-50 204.5 331 44.1
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 8.0e-50 201.8 345 42.9
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 6.7e-49 198.7 338 45.6
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 1.5e-48 197.6 308 45.5
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 2.0e-48 197.2 334 47.6
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 4.4e-48 196.1 315 44.4
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 7.5e-48 195.3 198 59.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 9.7e-48 194.9 334 41.3
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.3e-47 194.5 329 47.7
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 6.3e-47 192.2 337 43.0
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 8.2e-47 191.8 334 42.8
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 1.1e-46 191.4 318 45.0
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 7.0e-46 188.7 302 44.7
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 2.0e-45 187.2 283 45.9
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 3.5e-45 186.4 276 46.0
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 5.9e-45 185.7 337 42.4
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 1.7e-44 184.1 326 45.4
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 8.5e-44 181.8 332 42.5
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 3.2e-43 179.9 219 60.7
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 4.2e-43 179.5 306 41.8
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 9.4e-43 178.3 337 40.1
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 9.4e-43 178.3 334 42.2
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.2e-42 177.9 328 43.6
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 1.8e-41 174.1 336 39.6
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 6.8e-41 172.2 330 44.2
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 1.3e-39 167.9 324 44.8
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 2.8e-39 166.8 242 45.9
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 6.3e-39 165.6 343 41.7
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.3e-39 165.2 295 41.7
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.8e-38 164.1 295 41.4
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.4e-38 163.7 298 41.6
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 1.6e-37 161.0 192 54.7
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 3.5e-37 159.8 190 53.2
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 3.5e-37 159.8 349 39.0
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 4.5e-37 159.5 329 38.9
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 7.7e-37 158.7 325 44.0
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.0e-36 158.3 190 53.2
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.7e-36 157.5 274 46.0
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.7e-36 157.5 294 40.8
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 2.9e-36 156.8 178 53.9
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 2.9e-36 156.8 305 43.3
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 6.6e-36 155.6 232 47.4
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 6.6e-36 155.6 338 40.8
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 3.3e-35 153.3 350 43.1
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 5.5e-35 152.5 288 43.1
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 2.1e-34 150.6 325 36.3
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.8e-34 150.2 331 41.7
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 4.7e-34 149.4 331 43.8
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.8e-33 147.5 295 38.3
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.3e-33 147.1 286 40.2
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 2.3e-33 147.1 186 50.5
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 3.0e-33 146.7 187 52.9
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 3.0e-33 146.7 321 36.8
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 4.0e-33 146.4 183 51.9
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 6.8e-33 145.6 317 40.1
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 6.8e-33 145.6 312 35.9
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 2.0e-32 144.1 286 45.5
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.0e-32 144.1 286 45.5
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 2.0e-32 144.1 293 39.2
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 2.0e-32 144.1 293 39.2
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 2.0e-32 144.1 193 48.2
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.6e-32 143.7 286 45.5
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 7.5e-32 142.1 186 49.5
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 2.2e-31 140.6 317 35.3
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 2.8e-31 140.2 306 36.9
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 4.9e-31 139.4 304 39.1
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 1.1e-30 138.3 313 39.0
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 1.4e-30 137.9 277 43.0
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 3.1e-30 136.7 310 40.0
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 3.5e-29 133.3 358 34.4
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 1.7e-28 131.0 193 46.6
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 5.0e-28 129.4 193 46.1
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.9e-27 127.5 343 39.1
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 2.8e-26 123.6 323 36.8
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 8.0e-26 122.1 323 36.8
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 1.4e-25 121.3 342 37.4
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 2.3e-25 120.6 192 44.8
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 2.3e-25 120.6 320 36.9
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 4.0e-25 119.8 307 36.5
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 4.0e-25 119.8 307 36.5
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 8.9e-25 118.6 272 40.8
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 2.6e-24 117.1 328 35.7
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 2.6e-24 117.1 328 35.7
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 2.6e-24 117.1 328 35.7
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 2.6e-24 117.1 334 33.8
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 3.4e-24 116.7 112 64.3
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 1.3e-23 114.8 267 36.7
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 3.7e-23 113.2 183 46.4
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 4.9e-23 112.8 213 39.9
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 6.4e-23 112.5 194 42.3
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 1.1e-22 111.7 186 46.8
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 1.9e-22 110.9 130 53.8
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 2.4e-22 110.5 334 38.0
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 4.1e-22 109.8 268 35.1
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 5.4e-22 109.4 182 42.3
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 9.2e-22 108.6 122 54.9
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 1.6e-21 107.8 221 46.2
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.7e-21 107.1 227 37.4
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.7e-21 107.1 133 54.1
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 2.7e-21 107.1 333 34.8
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 4.6e-21 106.3 338 32.0
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.6e-21 106.3 152 48.0
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.9e-20 103.2 161 44.1
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.3e-19 99.0 176 43.2
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 7.3e-19 99.0 186 38.2
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 2.1e-18 97.4 319 34.2
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 3.6e-18 96.7 79 63.3
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 6.8e-17 92.4 286 33.9
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 3.4e-16 90.1 135 46.7
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 7.5e-16 89.0 61 73.8
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 1.1e-14 85.1 287 30.3
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 3.9e-12 76.6 51 74.5
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 3.9e-12 76.6 51 74.5
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 4.3e-11 73.2 58 65.5
ECA234G2998 Erigeron canadensis HOM05D006245 ORTHO05D007260 7.5e-08 62.4 133 40.6
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 1.7e-07 61.2 56 60.7


User provided reference genes

Program Settings