Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0231700 Rhododendron simsii HOM05D006410 ORTHO05D007914 2.6e-220 768.5 404 100.0
vmacro20378 Vaccinium macrocarpon HOM05D006410 ORTHO05D007914 1.9e-149 533.1 382 78.3
RhsimUnG0084100 Rhododendron simsii HOM05D006410 ORTHO05D007914 4.4e-127 458.8 256 95.3
TAR633G1493 Trochodendron aralioides HOM05D006410 ORTHO05D007914 6.5e-102 375.2 394 58.4
Dinv16966 Davidia involucrata HOM05D006410 ORTHO05D007914 1.4e-96 357.5 245 77.1
GSVIVG01030169001 Vitis vinifera HOM05D006410 ORTHO05D007914 3.2e-93 346.3 322 62.7
Atru.chr8.91 Acer truncatum HOM05D006410 ORTHO05D007914 1.9e-90 337.0 316 63.6
Ciclev10012138m.g Citrus clementina HOM05D006410 ORTHO05D007914 2.8e-89 333.2 240 74.2
RhsimUnG0080900 Rhododendron simsii HOM05D006410 ORTHO05D007914 2.6e-87 326.6 186 94.6
Sabra06G0085200 Salix brachista HOM05D006410 ORTHO05D007914 4.5e-87 325.9 331 60.1
QL07p031892 Quercus lobata HOM05D006410 ORTHO05D007914 3.8e-86 322.8 322 59.9
Lsat_1_v5_gn_9_39501 Lactuca sativa HOM05D006410 ORTHO05D007914 4.2e-85 319.3 272 65.4
CiPaw.10G165500 Carya illinoinensis HOM05D006410 ORTHO05D007914 5.5e-85 318.9 285 62.1
ECA247G0827 Erigeron canadensis HOM05D006410 ORTHO05D007914 9.4e-85 318.2 270 65.9
Actinidia20795 Actinidia chinensis HOM05D006410 ORTHO05D007914 2.1e-84 317.0 233 73.8
Potri.006G109500 Populus trichocarpa HOM05D006410 ORTHO05D007914 2.1e-84 317.0 378 52.9
Cfa013491 Carpinus fangiana HOM05D006410 ORTHO05D007914 6.1e-84 315.5 307 61.2
Manes.09G123200 Manihot esculenta HOM05D006410 ORTHO05D007914 2.3e-83 313.5 391 52.9
Haze_22079 Corylus avellana HOM05D006410 ORTHO05D007914 1.1e-82 311.2 284 62.3
PGR004G0643 Punica granatum HOM05D006410 ORTHO05D007914 1.1e-82 311.2 308 56.8
Hma1.2p1_0537F.1_g174300 Hydrangea macrophylla HOM05D006410 ORTHO05D007914 2.0e-82 310.5 242 68.6
Prupe.6G295400 Prunus persica HOM05D006410 ORTHO05D007914 1.1e-80 304.7 337 54.9
Duzib212G0115 Durio zibethinus HOM05D006410 ORTHO05D007914 1.4e-80 304.3 271 64.6
PSO339G1476 Papaver somniferum HOM05D006410 ORTHO05D007914 3.1e-80 303.1 314 55.4
Thecc.04G150000 Theobroma cacao HOM05D006410 ORTHO05D007914 3.1e-80 303.1 322 56.2
HanXRQChr15g0464751 Helianthus annuus HOM05D006410 ORTHO05D007914 4.1e-80 302.8 269 63.6
Eucgr.G00130 Eucalyptus grandis HOM05D006410 ORTHO05D007914 6.9e-80 302.0 270 61.9
COL.COLO4_03931 Corchorus olitorius HOM05D006410 ORTHO05D007914 1.2e-79 301.2 267 62.9
Eucgr.A00566 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.6e-79 300.1 270 61.1
Eucgr.J00376 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.6e-79 300.1 270 61.1
Nn2g10260 Nelumbo nucifera HOM05D006410 ORTHO05D007914 2.6e-79 300.1 400 48.5
Eucgr.G01626 Eucalyptus grandis HOM05D006410 ORTHO05D007914 4.5e-79 299.3 270 61.1
CAN.G1018.3 Capsicum annuum HOM05D006410 ORTHO05D007914 1.7e-78 297.4 270 60.0
arahy.Tifrunner.gnm1.ann1.K0FU58 Arachis hypogaea HOM05D006410 ORTHO05D007914 2.2e-78 297.0 250 64.4
Peaxi162Scf00146g01120 Petunia axillaris HOM05D006410 ORTHO05D007914 2.2e-78 297.0 240 64.2
TWI77G0542 Tripterygium wilfordii HOM05D006410 ORTHO05D007914 2.2e-78 297.0 293 59.7
ClCG04G006320 Citrullus lanatus HOM05D006410 ORTHO05D007914 5.0e-78 295.8 421 47.7
CsaV3_4G027230 Cucumis sativus L. HOM05D006410 ORTHO05D007914 6.5e-78 295.4 356 51.4
Psat3g118640 Pisum sativum HOM05D006410 ORTHO05D007914 1.4e-77 294.3 278 58.6
Aqoxy4G03284 Aquilegia oxysepala HOM05D006410 ORTHO05D007914 1.9e-77 293.9 290 59.0
Eucgr.H04867 Eucalyptus grandis HOM05D006410 ORTHO05D007914 1.9e-77 293.9 233 67.0
Eucgr.K01292 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.5e-77 293.5 349 52.4
arahy.Tifrunner.gnm1.ann1.LV5WBC Arachis hypogaea HOM05D006410 ORTHO05D007914 3.2e-77 293.1 250 63.2
PSO384G4459 Papaver somniferum HOM05D006410 ORTHO05D007914 3.2e-77 293.1 253 62.1
Glyma.18G212900 Glycine max HOM05D006410 ORTHO05D007914 5.5e-77 292.4 361 52.1
Medtr7g073510 Medicago truncatula HOM05D006410 ORTHO05D007914 5.5e-77 292.4 374 48.4
Lalb_Chr03g0043841 Lupinus albus HOM05D006410 ORTHO05D007914 9.4e-77 291.6 240 65.0
RcHm_v2.0_Chr3g0460291 Rosa chinensis HOM05D006410 ORTHO05D007914 1.2e-76 291.2 356 53.1
Glyma.09G273700 Glycine max HOM05D006410 ORTHO05D007914 2.1e-76 290.4 251 63.7
Lj1g0017463 Lotus japonicus HOM05D006410 ORTHO05D007914 3.6e-76 289.7 270 60.0
MD04G1175900 Malus domestica HOM05D006410 ORTHO05D007914 6.1e-76 288.9 421 46.1
Solyc10g085690.2 Solanum lycopersicum HOM05D006410 ORTHO05D007914 1.0e-75 288.1 307 55.0
MD12G1190300 Malus domestica HOM05D006410 ORTHO05D007914 2.3e-75 287.0 354 52.0
Sopen10g035110 Solanum pennellii HOM05D006410 ORTHO05D007914 3.9e-75 286.2 307 54.4
VMungo1383G1039 Vigna mungo HOM05D006410 ORTHO05D007914 3.9e-75 286.2 312 54.5
FAN02G1808 Fragaria x ananassa HOM05D006410 ORTHO05D007914 8.8e-75 285.0 357 51.8
Gohir.D02G003000 Gossypium hirsutum HOM05D006410 ORTHO05D007914 8.8e-75 285.0 271 60.5
FAN14G0316 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.1e-74 284.6 328 54.3
Phvul.008G081500 Phaseolus vulgaris HOM05D006410 ORTHO05D007914 2.0e-74 283.9 300 57.0
Nitab4.5_0009611g0010 Nicotiana tabacum HOM05D006410 ORTHO05D007914 3.3e-74 283.1 404 47.5
FvH4_6g09660 Fragaria vesca HOM05D006410 ORTHO05D007914 4.4e-74 282.7 356 51.4
FAN09G0831 Fragaria x ananassa HOM05D006410 ORTHO05D007914 4.4e-74 282.7 356 51.4
Gorai.005G003500 Gossypium raimondii HOM05D006410 ORTHO05D007914 4.4e-74 282.7 275 59.3
FAN05G4204 Fragaria x ananassa HOM05D006410 ORTHO05D007914 9.7e-74 281.6 356 51.4
Gohir.A02G002700 Gossypium hirsutum HOM05D006410 ORTHO05D007914 1.7e-73 280.8 260 61.2
TPR.G24331 Trifolium pratense HOM05D006410 ORTHO05D007914 8.2e-73 278.5 372 47.0
Nitab4.5_0000381g0170 Nicotiana tabacum HOM05D006410 ORTHO05D007914 2.4e-72 276.9 289 55.7
CDE04G0338 Ceratophyllum demersum HOM05D006410 ORTHO05D007914 4.1e-72 276.2 325 50.5
CANSAT21G1321 Cannabis sativa HOM05D006410 ORTHO05D007914 1.5e-69 267.7 263 61.2
Cc06_g00300 Coffea canephora HOM05D006410 ORTHO05D007914 1.5e-69 267.7 271 59.8
arahy.Tifrunner.gnm1.ann1.2Y9ZDG Arachis hypogaea HOM05D006410 ORTHO05D007914 9.4e-69 265.0 266 56.8
MSTRG.5489 Avicennia marina HOM05D006410 ORTHO05D007914 9.4e-69 265.0 328 48.5
Hund19754 Selenicereus undatus HOM05D006410 ORTHO05D007914 8.0e-68 261.9 330 51.8
SalBow5G5142 Salvia bowleyana HOM05D006410 ORTHO05D007914 5.2e-67 259.2 293 53.2
EL10Ac7g17116 Beta vulgaris HOM05D006410 ORTHO05D007914 6.7e-67 258.8 239 60.7
AUR62029781 Chenopodium quinoa HOM05D006410 ORTHO05D007914 8.8e-67 258.5 355 47.9
CSS0050432 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 5.7e-66 255.8 177 76.8
THA.LOC104806212 Tarenaya hassleriana HOM05D006410 ORTHO05D007914 1.8e-64 250.8 210 64.8
Thhalv10017800m.g Eutrema salsugineum HOM05D006410 ORTHO05D007914 3.1e-64 250.0 231 61.5
ATR1127G206 Amborella trichopoda HOM05D006410 ORTHO05D007914 1.2e-63 248.1 369 43.9
Zm00001eb395200 Zea mays HOM05D006410 ORTHO05D007914 2.7e-63 246.9 233 56.2
HPP92_026801 Vanilla planifolia HOM05D006410 ORTHO05D007914 1.3e-62 244.6 242 53.7
Sc07g0005960 Simmondsia chinensis HOM05D006410 ORTHO05D007914 1.7e-62 244.2 198 68.2
AL4G35850 Arabidopsis lyrata HOM05D006410 ORTHO05D007914 2.2e-62 243.8 188 68.6
HPP92_000776 Vanilla planifolia HOM05D006410 ORTHO05D007914 2.9e-62 243.4 242 53.3
CARHR133250 Cardamine hirsuta HOM05D006410 ORTHO05D007914 6.5e-62 242.3 252 57.5
BcaC01g05529 Brassica carinata HOM05D006410 ORTHO05D007914 1.5e-61 241.1 237 58.2
BolC3t14920H Brassica oleracea HOM05D006410 ORTHO05D007914 1.5e-61 241.1 237 58.2
Carub.0004s2056 Capsella rubella HOM05D006410 ORTHO05D007914 2.5e-61 240.4 243 56.4
BcaB01g03675 Brassica carinata HOM05D006410 ORTHO05D007914 3.2e-61 240.0 240 57.1
arahy.Tifrunner.gnm1.ann1.A09QMR Arachis hypogaea HOM05D006410 ORTHO05D007914 5.5e-61 239.2 169 74.0
arahy.Tifrunner.gnm1.ann1.PEH6CG Arachis hypogaea HOM05D006410 ORTHO05D007914 5.5e-61 239.2 189 68.8
CSS0030024 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 5.5e-61 239.2 163 77.9
BraA03t11374Z Brassica rapa HOM05D006410 ORTHO05D007914 7.2e-61 238.8 189 67.7
A03p21390 Brassica napus HOM05D006410 ORTHO05D007914 3.6e-60 236.5 189 67.7
C03p25260 Brassica napus HOM05D006410 ORTHO05D007914 1.0e-59 235.0 264 54.2
AT2G38570 Arabidopsis thaliana HOM05D006410 ORTHO05D007914 1.4e-59 234.6 227 59.9
Sp4g20910 Schrenkiella parvula HOM05D006410 ORTHO05D007914 3.0e-59 233.4 282 52.8
SGA_v2.0_scaffold85G26601 Striga asiatica HOM05D006410 ORTHO05D007914 1.5e-58 231.1 280 48.9
Lj3A940G60 Lonicera japonica HOM05D006410 ORTHO05D007914 7.0e-56 222.2 324 47.8
SEGI_21416 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 1.3e-54 218.0 335 41.8
CSS0025367 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 8.6e-54 215.3 189 68.3
Ca_07767_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 8.6e-54 215.3 174 64.9
Ca_07774_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 9.8e-50 201.8 198 57.1
SalBow5G0627 Salvia bowleyana HOM05D006410 ORTHO05D007914 1.1e-48 198.4 199 57.8
Cpa.g.sc86.77 Carica papaya HOM05D006410 ORTHO05D007914 1.0e-46 191.8 275 48.7
BcaB01g00971 Brassica carinata HOM05D006410 ORTHO05D007914 1.6e-44 184.5 178 60.1
CSS0000421 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 6.0e-39 166.0 224 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4011 Anthoceros agrestis HOM05D006410 ORTHO05D007914 7.8e-39 165.6 205 43.4
MELO3C025226.2 Cucumis melo HOM05D006410 ORTHO05D007914 3.6e-36 156.8 287 41.8
arahy.Tifrunner.gnm1.ann1.CPU7B3 Arachis hypogaea HOM05D006410 ORTHO05D007914 1.2e-34 151.8 201 47.8
Os03g0334100 Oryza sativa ssp. japonica HOM05D006410 ORTHO05D007914 3.0e-30 137.1 101 65.3
Sed0027859 Sechium edule HOM05D006410 ORTHO05D007914 3.1e-27 127.1 269 38.3
MCO09G517 Micromonas commoda HOM05D006410 ORTHO05D007914 1.5e-21 108.2 195 33.3
CBR_g644 Chara braunii HOM05D006410 ORTHO05D007914 4.7e-20 103.2 214 31.8
Duzib151G0462 Durio zibethinus HOM05D006410 ORTHO05D007914 1.7e-17 94.7 61 75.4
Lsat_1_v5_gn_8_97960 Lactuca sativa HOM05D006410 ORTHO05D007914 2.1e-15 87.8 56 82.1
SEGI_07330 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 4.6e-15 86.7 196 35.7
CDE04G1109 Ceratophyllum demersum HOM05D040252 ORTHO05D007914 3.9e-14 83.6 55 76.4
Oeu030096.1 Olea europaea HOM05D006410 ORTHO05D007914 2.2e-09 67.8 118 45.8
Cre17.g738200 Chlamydomonas reinhardtii HOM05D006410 ORTHO05D007914 7.1e-08 62.8 154 32.5
Eucgr.E03158 Eucalyptus grandis HOM05D006410 ORTHO05D007914 3.5e-07 60.5 69 52.2


User provided reference genes

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