Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1697.6 906 100.0
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 0.0e+00 1426.4 881 88.3
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1309.3 908 78.6
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1307.4 912 77.1
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1306.6 912 77.0
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1302.7 912 77.0
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1261.1 911 73.4
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1233.4 910 73.6
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 0.0e+00 1231.1 910 73.5
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 0.0e+00 1203.3 911 72.0
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1124.4 910 66.5
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1109.4 913 66.9
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 0.0e+00 1105.9 906 66.9
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1093.6 910 64.7
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1085.9 908 66.3
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1082.8 775 76.8
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 9.3e-311 1070.1 908 66.4
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 2.8e-307 1058.5 908 64.9
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 2.7e-305 1052.0 912 64.4
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.0e-304 1047.7 914 63.9
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 8.6e-304 1047.0 917 63.1
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 1.9e-303 1045.8 908 64.4
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.2e-303 1044.6 917 63.8
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 2.1e-302 1042.3 910 63.6
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 8.0e-302 1040.4 917 63.5
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 1.0e-301 1040.0 916 64.3
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 8.9e-301 1036.9 907 64.7
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 4.1e-298 1028.1 911 63.3
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.0e-296 1023.5 916 62.3
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.3e-296 1023.1 894 65.0
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-295 1019.6 916 62.1
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 6.2e-294 1014.2 912 62.5
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 8.0e-294 1013.8 912 62.8
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 7.5e-292 1007.3 910 61.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.4e-291 1004.2 916 63.1
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.9e-290 1002.7 916 62.9
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 7.0e-290 1000.7 914 61.2
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 8.9e-285 983.8 873 66.1
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.4e-284 981.9 909 60.9
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.4e-282 976.5 909 62.6
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 3.9e-280 968.4 909 61.4
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 6.6e-280 967.6 874 64.1
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 4.0e-277 958.4 911 58.5
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 1.9e-274 949.5 913 60.0
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 4.1e-274 948.3 901 59.4
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.1e-273 946.0 897 59.3
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.7e-273 945.7 871 61.8
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.1e-271 940.3 926 58.3
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 7.3e-271 937.6 926 58.3
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 8.1e-270 934.1 911 59.2
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.4e-269 933.3 914 59.4
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 3.1e-269 932.2 915 59.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.1e-269 932.2 916 57.9
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.5e-268 929.9 915 59.6
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.6e-268 929.1 907 60.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.9e-266 922.9 922 57.8
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.1e-266 921.0 915 59.8
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 1.6e-265 919.8 912 60.5
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.3e-264 916.8 927 58.0
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.1e-264 914.8 899 60.2
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 6.6e-264 914.4 899 60.1
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 8.7e-264 914.1 899 60.0
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.1e-263 913.7 913 58.7
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.3e-263 911.8 902 60.4
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.6e-262 909.8 926 57.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 2.4e-261 906.0 928 58.1
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 5.3e-261 904.8 928 58.2
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 6.9e-261 904.4 911 58.7
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-259 900.2 909 58.9
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 3.8e-259 898.7 897 58.4
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 6.4e-259 897.9 913 58.2
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 3.2e-258 895.6 906 57.7
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.2e-258 895.2 920 56.5
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 5.4e-258 894.8 911 59.2
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.6e-257 893.3 908 57.4
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 6.0e-257 891.3 808 63.1
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 6.0e-257 891.3 808 63.1
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 7.9e-257 891.0 894 58.9
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 7.9e-257 891.0 893 55.4
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.7e-256 889.8 918 58.4
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 6.6e-256 887.9 811 63.0
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 6.6e-256 887.9 913 58.6
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.5e-255 885.9 909 57.1
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.3e-254 883.6 913 57.7
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.6e-254 883.2 911 58.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 8.1e-254 880.9 894 58.7
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.4e-253 879.4 914 58.2
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.4e-250 869.4 913 57.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 3.9e-248 862.1 894 58.3
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 6.7e-248 861.3 894 58.3
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.5e-247 860.1 871 58.3
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.1e-246 856.3 909 57.0
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.4e-245 853.6 871 59.1
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 2.4e-245 852.8 918 57.1
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 6.5e-243 844.7 872 58.3
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.4e-242 843.6 872 58.6
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.2e-241 840.5 879 57.7
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 3.9e-240 835.5 913 55.5
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 7.4e-239 831.2 914 54.8
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 2.9e-235 819.3 912 56.4
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 2.7e-233 812.8 912 51.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 4.6e-233 812.0 855 54.3
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.1e-233 811.6 876 57.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.0e-232 809.3 855 57.1
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.1e-232 808.5 914 55.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 3.8e-227 792.3 913 55.1
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 2.3e-224 783.1 855 56.1
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.5e-223 780.4 874 54.0
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 4.3e-223 778.9 916 54.1
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 8.2e-222 774.6 858 55.0
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.7e-220 768.1 868 54.6
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.7e-215 751.9 915 51.0
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.7e-211 740.3 906 52.1
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.9e-210 736.9 907 51.4
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 2.1e-209 733.4 740 58.6
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.0e-209 731.5 783 54.8
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 7.5e-207 724.9 910 51.3
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 7.5e-207 724.9 941 51.1
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.5e-204 715.7 908 49.4
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.3e-203 714.1 929 51.5
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 3.8e-203 712.6 929 51.3
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 6.5e-203 711.8 910 48.6
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 9.1e-197 691.4 869 52.1
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 7.7e-196 688.3 890 50.1
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.1e-193 680.2 888 50.6
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.0e-192 677.9 890 49.3
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.0e-192 677.9 856 50.6
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.3e-190 671.0 892 48.0
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 4.9e-190 669.1 804 52.7
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.5e-186 657.5 888 49.5
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.4e-183 646.0 921 46.7
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.1e-181 641.3 884 49.3
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 7.8e-180 635.2 884 48.5
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.9e-178 630.6 884 48.1
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.6e-177 627.5 871 48.7
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 4.7e-177 625.9 902 47.8
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 1.8e-176 624.0 871 48.3
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 1.5e-175 620.9 904 46.7
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 2.6e-175 620.2 927 46.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.7e-174 617.5 773 51.7
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.1e-170 604.7 858 48.1
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 7.3e-170 602.1 894 46.4
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 8.9e-168 595.1 927 46.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 8.9e-168 595.1 930 46.1
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.2e-167 594.7 777 49.3
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-164 584.3 855 45.3
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 3.4e-159 566.6 777 48.5
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 4.1e-157 559.7 753 50.3
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 4.5e-143 513.1 907 44.3
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.4e-136 491.5 732 48.6
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 5.5e-133 479.6 461 59.7
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 7.6e-127 459.1 770 46.1
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 6.5e-126 456.1 922 40.1
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 9.3e-125 452.2 651 48.2
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.0e-119 434.5 924 38.5
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 6.7e-115 419.5 943 38.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.8e-113 414.1 913 36.9
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.7e-113 413.7 939 38.9
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 5.3e-112 409.8 930 38.4
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.4e-107 395.2 407 59.0
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.7e-97 360.5 932 37.1
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 6.3e-97 359.8 932 36.9
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.5e-94 349.7 996 34.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.8e-91 341.7 904 35.4
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.1e-84 318.2 958 33.7
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 2.0e-79 301.6 365 47.4
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.7e-73 280.8 426 46.2
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 4.1e-72 277.3 315 47.9
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.8e-68 264.6 379 48.0
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.0e-62 246.1 359 45.4
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-62 245.7 509 38.5
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.9e-61 241.9 299 48.2
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 3.2e-56 224.6 258 50.4
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.8e-55 219.9 878 33.0
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 3.6e-52 211.1 263 62.4
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 4.1e-48 197.6 361 38.2
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 7.1e-48 196.8 282 41.8
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.3e-45 186.8 251 43.4
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.9e-43 179.9 337 35.6
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 1.2e-42 179.5 97 94.8
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.9e-42 176.4 704 29.1
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 6.6e-38 163.7 182 52.2
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.8e-19 102.4 156 40.4
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.8e-10 70.9 499 22.4
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 4.2e-08 64.7 85 43.5


User provided reference genes

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