Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.6e-50 201.8 108 100.0
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 6.3e-36 154.1 108 74.1
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.5e-32 141.0 108 71.3
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.1e-31 139.0 108 70.4
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.1e-30 134.4 107 68.2
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 2.5e-29 132.1 107 69.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.8e-28 128.6 107 66.4
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.8e-28 127.9 107 64.5
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.1e-27 125.2 108 61.1
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 4.1e-27 124.8 107 62.6
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 6.9e-27 124.0 108 59.3
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 9.1e-27 123.6 107 58.9
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.5e-26 121.3 107 57.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 3.8e-25 118.2 107 56.1
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 6.5e-25 117.5 107 57.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.4e-24 116.3 107 55.1
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 5.5e-24 114.4 107 57.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 9.4e-24 113.6 107 57.0
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 7.9e-23 110.5 108 55.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.8e-22 109.4 107 56.1
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.3e-22 109.0 108 53.7
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 2.3e-22 109.0 108 56.5
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.0e-22 108.6 107 56.1
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.9e-22 108.2 107 53.3
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 6.7e-22 107.5 107 53.3
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.5e-21 106.3 107 49.5
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.5e-21 106.3 107 52.3
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.5e-21 106.3 109 58.7
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.0e-21 105.9 107 54.2
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 3.3e-21 105.1 108 50.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 3.3e-21 105.1 108 52.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 5.7e-21 104.4 104 51.9
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.7e-21 104.4 108 51.9
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.4e-21 104.0 107 51.4
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 7.4e-21 104.0 108 52.8
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 7.4e-21 104.0 105 53.3
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.3e-20 103.2 108 51.9
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.2e-20 102.4 107 52.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.2e-20 102.4 107 52.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.2e-20 102.4 107 52.3
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.2e-20 102.4 108 50.9
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.8e-20 102.1 108 50.9
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 4.8e-20 101.3 107 51.4
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 6.3e-20 100.9 108 50.0
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 6.3e-20 100.9 108 50.0
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 6.3e-20 100.9 107 50.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.2e-20 100.5 107 51.4
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.2e-20 100.5 104 50.0
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.4e-19 99.8 108 50.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.8e-19 99.4 107 50.5
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.4e-19 99.0 107 48.6
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.1e-19 98.6 107 49.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.1e-19 98.2 108 48.1
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 5.3e-19 97.8 114 47.4
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.0e-18 95.9 107 45.8
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 5.9e-18 94.4 108 50.0
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 7.7e-18 94.0 108 50.9
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.0e-17 93.6 108 50.0
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.3e-17 93.2 107 48.6
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.7e-17 92.8 109 49.5
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.9e-17 92.0 107 46.7
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.8e-17 91.7 102 49.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 5.0e-17 91.3 107 47.7
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.1e-16 90.1 107 47.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 1.9e-16 89.4 107 43.0
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 1.9e-16 89.4 109 48.6
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 3.2e-16 88.6 98 49.0
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 3.6e-15 85.1 107 41.1
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 4.7e-15 84.7 120 42.5
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 1.4e-14 83.2 108 42.6
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.3e-14 82.4 95 48.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.3e-14 82.4 107 41.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.1e-13 80.1 99 43.4
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-13 80.1 107 39.3
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 2.6e-13 79.0 107 43.9
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.3e-13 78.6 96 46.9
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 3.3e-13 78.6 106 39.6
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 4.4e-13 78.2 108 42.6
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 5.7e-13 77.8 95 46.3
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.2e-12 75.9 85 48.2
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.8e-12 75.5 107 43.0
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 6.3e-12 74.3 106 38.7
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.3e-12 74.3 100 42.0
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.4e-11 73.2 108 40.7
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-11 73.2 100 42.0
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.4e-11 72.4 107 43.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.4e-11 72.4 107 36.4
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.1e-11 72.0 100 41.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 7.0e-11 70.9 101 40.6
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 9.1e-11 70.5 107 37.4
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.6e-10 69.7 73 50.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.6e-10 69.7 102 40.2
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.0e-10 69.3 79 48.1
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 5.9e-10 67.8 109 37.6
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.0e-09 67.0 102 36.3
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.2e-09 65.9 107 38.3
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 6.5e-09 64.3 105 37.1
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.5e-08 62.4 106 36.8
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.2e-07 60.1 107 38.3
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 6.1e-07 57.8 98 36.7
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.0e-06 57.0 108 31.5
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.0e-06 57.0 106 34.0
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-06 56.6 110 35.5
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-06 55.8 109 33.9
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 2.3e-06 55.8 109 34.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 4.0e-06 55.1 113 28.3
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 8.8e-06 53.9 101 31.7


User provided reference genes

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