Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0219400 Rhododendron simsii HOM05D006146 ORTHO05D007924 5.6e-40 167.2 84 100.0
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-13 79.7 57 75.4
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.5e-13 79.3 57 71.9
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 7.6e-13 77.0 58 69.0
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.2e-12 75.5 54 74.1
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 4.1e-11 71.2 58 60.3
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 2.7e-10 68.6 59 52.5
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 2.7e-10 68.6 58 56.9
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 1.0e-09 66.6 58 55.2
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 1.0e-09 66.6 58 53.4
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 1.3e-09 66.2 58 53.4
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.7e-09 65.9 58 58.6
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.7e-09 65.9 58 58.6
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.7e-09 65.9 58 51.7
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 1.7e-09 65.9 58 53.4
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.3e-09 65.5 58 58.6
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.3e-09 65.5 58 58.6
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 2.3e-09 65.5 58 51.7
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 2.3e-09 65.5 58 51.7
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 2.3e-09 65.5 58 55.2
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 3.0e-09 65.1 58 50.0
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 3.0e-09 65.1 58 53.4
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 3.0e-09 65.1 58 53.4
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 3.9e-09 64.7 58 55.2
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 3.9e-09 64.7 58 51.7
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 3.9e-09 64.7 56 55.4
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 5.1e-09 64.3 58 53.4
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 5.1e-09 64.3 58 53.4
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 6.6e-09 63.9 58 50.0
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 6.6e-09 63.9 58 51.7
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 6.6e-09 63.9 58 50.0
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 8.7e-09 63.5 58 48.3
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 1.1e-08 63.2 58 51.7
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 1.1e-08 63.2 58 51.7
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.5e-08 62.8 58 50.0
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 1.5e-08 62.8 58 53.4
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.5e-08 62.8 58 50.0
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 1.5e-08 62.8 77 48.1
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 1.9e-08 62.4 58 53.4
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.9e-08 62.4 58 48.3
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 1.9e-08 62.4 58 48.3
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 1.9e-08 62.4 58 51.7
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 1.9e-08 62.4 58 48.3
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.9e-08 62.4 58 51.7
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 2.5e-08 62.0 58 51.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.5e-08 62.0 58 50.0
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 2.5e-08 62.0 58 50.0
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 2.5e-08 62.0 58 48.3
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 3.3e-08 61.6 58 51.7
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 3.3e-08 61.6 58 51.7
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 3.3e-08 61.6 58 46.6
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 3.3e-08 61.6 58 50.0
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 4.3e-08 61.2 58 48.3
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 4.3e-08 61.2 58 50.0
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.3e-08 61.2 58 55.2
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 4.3e-08 61.2 58 48.3
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 4.3e-08 61.2 58 48.3
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 5.6e-08 60.8 58 53.4
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 5.6e-08 60.8 58 50.0
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 5.6e-08 60.8 58 50.0
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 5.6e-08 60.8 56 53.6
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 7.3e-08 60.5 58 50.0
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 7.3e-08 60.5 58 48.3
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 7.3e-08 60.5 58 53.4
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 7.3e-08 60.5 58 48.3
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 9.6e-08 60.1 58 48.3
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 9.6e-08 60.1 58 51.7
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 9.6e-08 60.1 58 51.7
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 9.6e-08 60.1 58 51.7
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 9.6e-08 60.1 58 50.0
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 9.6e-08 60.1 55 50.9
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 1.2e-07 59.7 58 48.3
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 1.2e-07 59.7 58 48.3
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 1.2e-07 59.7 58 48.3
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.2e-07 59.7 58 48.3
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 1.2e-07 59.7 58 48.3
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 1.6e-07 59.3 58 50.0
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 1.6e-07 59.3 58 48.3
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 1.6e-07 59.3 58 50.0
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 2.1e-07 58.9 58 48.3
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 2.1e-07 58.9 58 50.0
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 2.1e-07 58.9 58 48.3
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 2.8e-07 58.5 58 48.3
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.8e-07 58.5 58 46.6
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 2.8e-07 58.5 58 50.0
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 2.8e-07 58.5 58 50.0
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 2.8e-07 58.5 58 48.3
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 3.6e-07 58.2 58 46.6
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 3.6e-07 58.2 58 50.0
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 3.6e-07 58.2 58 50.0
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 4.7e-07 57.8 58 46.6
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 4.7e-07 57.8 58 48.3
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 8.1e-07 57.0 68 47.1
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.1e-06 56.6 58 43.1
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 1.1e-06 56.6 68 44.1
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 1.1e-06 56.6 58 46.6
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.1e-06 56.6 68 41.2
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 1.4e-06 56.2 58 44.8
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 1.4e-06 56.2 59 49.2
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 1.4e-06 56.2 58 46.6
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 1.4e-06 56.2 58 50.0
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 1.8e-06 55.8 58 44.8
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 2.4e-06 55.5 69 44.9
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 2.4e-06 55.5 58 50.0
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 2.4e-06 55.5 58 48.3
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 3.1e-06 55.1 58 44.8
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 3.1e-06 55.1 58 46.6
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 4.0e-06 54.7 58 43.1
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 5.2e-06 54.3 61 47.5
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 5.2e-06 54.3 58 44.8
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 6.9e-06 53.9 58 48.3
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 6.9e-06 53.9 58 46.6
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 9.0e-06 53.5 58 46.6


User provided reference genes

Program Settings