Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0218200 Rhododendron simsii HOM05D000020 ORTHO05D007189 1.1e-137 493.4 274 100.0
RhsimUnG0032100 Rhododendron simsii HOM05D000020 ORTHO05D007189 7.4e-33 145.2 84 85.7
Rhsim03G0139400 Rhododendron simsii HOM05D000020 ORTHO05D007189 1.4e-28 131.0 71 83.1
Actinidia29672 Actinidia chinensis HOM05D000020 ORTHO05D007189 1.7e-21 107.5 71 66.2
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 6.5e-21 105.5 71 67.6
Cpa.g.sc19.225 Carica papaya HOM05D000020 ORTHO05D007189 1.1e-20 104.8 72 65.3
COL.COLO4_25678 Corchorus olitorius HOM05D000020 ORTHO05D007189 2.5e-20 103.6 71 69.0
Lsat_1_v5_gn_9_63241 Lactuca sativa HOM05D000020 ORTHO05D007189 3.2e-20 103.2 71 63.4
Dinv20942 Davidia involucrata HOM05D000020 ORTHO05D007189 4.2e-20 102.8 71 67.6
Dinv21002 Davidia involucrata HOM05D000020 ORTHO05D007189 4.2e-20 102.8 71 67.6
Gohir.A10G228800 Gossypium hirsutum HOM05D000020 ORTHO05D007189 5.5e-20 102.4 71 66.2
Gohir.D10G242800 Gossypium hirsutum HOM05D000020 ORTHO05D007189 5.5e-20 102.4 71 66.2
Gorai.011G279200 Gossypium raimondii HOM05D000020 ORTHO05D007189 5.5e-20 102.4 71 66.2
Lj1P949T30 Lonicera japonica HOM05D000020 ORTHO05D007189 5.5e-20 102.4 71 63.4
Thecc.10G027300 Theobroma cacao HOM05D000020 ORTHO05D007189 5.5e-20 102.4 71 67.6
Atru.chr12.254 Acer truncatum HOM05D000020 ORTHO05D007189 7.2e-20 102.1 72 65.3
Duzib114G0064 Durio zibethinus HOM05D000020 ORTHO05D007189 9.3e-20 101.7 71 66.2
GSVIVG01016379001 Vitis vinifera HOM05D000020 ORTHO05D007189 9.3e-20 101.7 71 64.8
SalBow6G4238 Salvia bowleyana HOM05D000020 ORTHO05D007189 1.2e-19 101.3 74 60.8
SalBow6G4632 Salvia bowleyana HOM05D000020 ORTHO05D007189 1.2e-19 101.3 74 60.8
BcaC07g39905 Brassica carinata HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 63.4
A09p48780 Brassica napus HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 63.4
C08p31110 Brassica napus HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 63.4
BolC8t50732H Brassica oleracea HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 63.4
BraA09t40331Z Brassica rapa HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 63.4
QL08p062543 Quercus lobata HOM05D000020 ORTHO05D007189 1.6e-19 100.9 71 64.8
BcaB01g00062 Brassica carinata HOM05D000020 ORTHO05D007189 2.1e-19 100.5 71 63.4
Gohir.A13G016650 Gossypium hirsutum HOM05D000020 ORTHO05D007189 2.1e-19 100.5 72 62.5
Gohir.D13G017750 Gossypium hirsutum HOM05D000020 ORTHO05D007189 2.1e-19 100.5 72 62.5
Gorai.013G019700 Gossypium raimondii HOM05D000020 ORTHO05D007189 2.1e-19 100.5 72 62.5
Oeu006659.1 Olea europaea HOM05D000020 ORTHO05D007189 2.1e-19 100.5 71 62.0
Sabra10G0149100 Salix brachista HOM05D000020 ORTHO05D007189 2.1e-19 100.5 71 63.4
Sed0021137 Sechium edule HOM05D000020 ORTHO05D007189 2.7e-19 100.1 71 63.4
Lsat_1_v5_gn_2_120421 Lactuca sativa HOM05D000020 ORTHO05D007189 3.6e-19 99.8 71 59.2
MD01G1145800 Malus domestica HOM05D000020 ORTHO05D007189 3.6e-19 99.8 71 64.8
AL5G37060 Arabidopsis lyrata HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 62.0
AT3G55780 Arabidopsis thaliana HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 62.0
Carub.0005s2257 Capsella rubella HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 62.0
MD07G1213000 Malus domestica HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 64.8
Sc11g0007320 Simmondsia chinensis HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 64.8
TAR623G0626 Trochodendron aralioides HOM05D000020 ORTHO05D007189 4.6e-19 99.4 71 63.4
Thhalv10010910m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 6.1e-19 99.0 71 62.0
Potri.010G193700 Populus trichocarpa HOM05D000020 ORTHO05D007189 6.1e-19 99.0 71 62.0
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 7.9e-19 98.6 74 62.2
CARHR165890 Cardamine hirsuta HOM05D000020 ORTHO05D007189 1.0e-18 98.2 71 60.6
TWI73G0310 Tripterygium wilfordii HOM05D000020 ORTHO05D007189 1.0e-18 98.2 71 62.0
CsaV3_5G008860 Cucumis sativus L. HOM05D000020 ORTHO05D007189 1.4e-18 97.8 71 63.4
SGA_v2.0_scaffold76G25053 Striga asiatica HOM05D000020 ORTHO05D007189 1.4e-18 97.8 71 62.0
ClCG07G003890 Citrullus lanatus HOM05D000020 ORTHO05D007189 1.8e-18 97.4 71 60.6
Aa31LG10G10770 Aethionema arabicum HOM05D000020 ORTHO05D007189 2.3e-18 97.1 74 56.8
Manes.07G124600 Manihot esculenta HOM05D000020 ORTHO05D007189 2.3e-18 97.1 72 59.7
vmacro19853 Vaccinium macrocarpon HOM05D000020 ORTHO05D007189 2.3e-18 97.1 69 63.8
CiPaw.01G295200 Carya illinoinensis HOM05D000020 ORTHO05D007189 3.0e-18 96.7 71 64.8
Ciclev10033928m.g Citrus clementina HOM05D000020 ORTHO05D007189 3.9e-18 96.3 71 59.2
Migut.F01439 Erythranthe guttata HOM05D000020 ORTHO05D007189 3.9e-18 96.3 71 57.7
TWI09G0809 Tripterygium wilfordii HOM05D000020 ORTHO05D007189 5.1e-18 95.9 71 59.2
CANSAT56G3422 Cannabis sativa HOM05D000020 ORTHO05D007189 6.7e-18 95.5 71 62.0
CAN.G394.1 Capsicum annuum HOM05D000020 ORTHO05D007189 6.7e-18 95.5 71 63.4
ECA238G3771 Erigeron canadensis HOM05D000020 ORTHO05D007189 6.7e-18 95.5 71 57.7
Rhsim04G0169100 Rhododendron simsii HOM05D000020 ORTHO05D007189 6.7e-18 95.5 86 55.8
THA.LOC104810181 Tarenaya hassleriana HOM05D000020 ORTHO05D007189 8.8e-18 95.1 74 58.1
Nitab4.5_0000278g0220 Nicotiana tabacum HOM05D006983 ORTHO05D007189 1.1e-17 94.7 71 57.7
Nitab4.5_0012179g0010 Nicotiana tabacum HOM05D006983 ORTHO05D007189 1.1e-17 94.7 71 57.7
AUR62022832 Chenopodium quinoa HOM05D000020 ORTHO05D007189 1.9e-17 94.0 71 56.3
Prupe.2G245200 Prunus persica HOM05D000020 ORTHO05D007189 1.9e-17 94.0 71 59.2
Solyc11g072230.1 Solanum lycopersicum HOM05D000020 ORTHO05D007189 2.5e-17 93.6 71 60.6
Sopen11g029900 Solanum pennellii HOM05D000020 ORTHO05D007189 2.5e-17 93.6 71 60.6
PGSC0003DMG400027385 Solanum tuberosum HOM05D000020 ORTHO05D007189 2.5e-17 93.6 71 60.6
PGSC0003DMG400031040 Solanum tuberosum HOM05D000020 ORTHO05D007189 2.5e-17 93.6 71 60.6
Ah.16g103070 Amaranthus hybridus HOM05D003256 ORTHO05D005659 3.3e-17 93.2 71 54.9
DCAR_019006 Daucus carota HOM05D000020 ORTHO05D007189 3.3e-17 93.2 71 59.2
Nn2g13587 Nelumbo nucifera HOM05D000020 ORTHO05D007189 4.3e-17 92.8 71 59.2
vmacro19893 Vaccinium macrocarpon HOM05D000020 ORTHO05D007189 4.3e-17 92.8 71 63.4
LjContig00357g0008917 Lotus japonicus HOM05D000020 ORTHO05D007189 7.4e-17 92.0 71 59.2
Aqoxy1G00735 Aquilegia oxysepala HOM05D000020 ORTHO05D007189 9.7e-17 91.7 71 59.2
Glyma.02G253800 Glycine max HOM05D000020 ORTHO05D007189 9.7e-17 91.7 71 59.2
HanXRQChr09g0246881 Helianthus annuus HOM05D000020 ORTHO05D007189 1.7e-16 90.9 71 57.7
RcHm_v2.0_Chr1g0369251 Rosa chinensis HOM05D000020 ORTHO05D007189 1.7e-16 90.9 71 57.7
AUR62012199 Chenopodium quinoa HOM05D000020 ORTHO05D007189 2.2e-16 90.5 71 52.1
MBI05_g34817_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 2.2e-16 90.5 71 57.7
Phvul.008G227100 Phaseolus vulgaris HOM05D000020 ORTHO05D007189 2.2e-16 90.5 71 59.2
Ca_05925_v3 Cicer arietinum L. HOM05D000020 ORTHO05D007189 2.8e-16 90.1 71 59.2
Cc02_g06980 Coffea canephora HOM05D000020 ORTHO05D007189 2.8e-16 90.1 71 56.3
Psat2g036120 Pisum sativum HOM05D000020 ORTHO05D007189 2.8e-16 90.1 71 59.2
Thhalv10005331m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 3.7e-16 89.7 71 54.9
MBI05_g34815_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 3.7e-16 89.7 71 54.9
PGR044G2611 Punica granatum HOM05D000020 ORTHO05D007189 3.7e-16 89.7 71 53.5
EL10Ac2g04779 Beta vulgaris HOM05D000020 ORTHO05D007189 8.2e-16 88.6 74 56.8
Sed0018426 Sechium edule HOM05D000020 ORTHO05D007189 8.2e-16 88.6 62 62.9
MBI05_g34812_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 1.1e-15 88.2 71 52.1
TPR.G8040 Trifolium pratense HOM05D000020 ORTHO05D007189 1.1e-15 88.2 71 59.2
VMungo0647G1539 Vigna mungo HOM05D000020 ORTHO05D007189 1.4e-15 87.8 71 56.3
Lalb_Chr04g0250801 Lupinus albus HOM05D000020 ORTHO05D007189 1.8e-15 87.4 69 58.0
Medtr5g081720 Medicago truncatula HOM05D000020 ORTHO05D007189 1.8e-15 87.4 63 63.5
MBI05_g34816_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 2.4e-15 87.0 71 53.5
FvH4_7g23880 Fragaria vesca HOM05D000020 ORTHO05D007189 3.1e-15 86.7 63 60.3
FAN06G2964 Fragaria x ananassa HOM05D000020 ORTHO05D007189 3.1e-15 86.7 63 60.3
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.1e-15 86.3 63 60.3
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 6.9e-15 85.5 63 60.3
Lalb_Chr10g0104971 Lupinus albus HOM05D000020 ORTHO05D007189 6.9e-15 85.5 71 57.7
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 9.1e-15 85.1 63 58.7
FAN03G1342 Fragaria x ananassa HOM05D000020 ORTHO05D007189 2.0e-14 84.0 63 58.7
Thhalv10006375m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 2.6e-14 83.6 71 49.3
Thhalv10006480m.g Eutrema salsugineum HOM05D000020 ORTHO05D007189 3.4e-14 83.2 71 46.5
Ah.05g174440 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.7e-14 82.0 71 49.3
MBI05_g34814_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 1.7e-13 80.9 71 50.7
FAN01G2528 Fragaria x ananassa HOM05D000020 ORTHO05D007189 1.1e-12 78.2 63 55.6
TAR629G2587 Trochodendron aralioides HOM05D000020 ORTHO05D014328 2.5e-12 77.0 95 44.2
ATR0379G001 Amborella trichopoda HOM05D000020 ORTHO05D007189 7.9e-11 72.0 62 50.0
FAN06G1009 Fragaria x ananassa HOM05D000020 ORTHO05D007189 1.0e-10 71.6 63 54.0
MBI09_g04144_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 1.0e-10 71.6 56 57.1
BcaC08g44842 Brassica carinata HOM05D000020 ORTHO05D007189 8.8e-10 68.6 87 42.5
C06p24490 Brassica napus HOM05D000020 ORTHO05D007189 8.8e-10 68.6 87 42.5
BolC6t37596H Brassica oleracea HOM05D000020 ORTHO05D007189 8.8e-10 68.6 87 42.5
MBI05_g34810_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 1.1e-09 68.2 71 47.9
MBI05_g34807_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D007189 1.5e-09 67.8 71 46.5
A07p23410 Brassica napus HOM05D000020 ORTHO05D007189 2.0e-09 67.4 87 42.5
BraA07t30004Z Brassica rapa HOM05D000020 ORTHO05D007189 2.0e-09 67.4 87 42.5
BcaB02g07605 Brassica carinata HOM05D000020 ORTHO05D007189 4.4e-09 66.2 71 47.9
Sp5g06700 Schrenkiella parvula HOM05D000020 ORTHO05D007189 3.7e-08 63.2 71 46.5
CARHR172140 Cardamine hirsuta HOM05D000020 ORTHO05D014328 8.2e-08 62.0 78 44.9
AL5G44370 Arabidopsis lyrata HOM05D000020 ORTHO05D014328 1.1e-07 61.6 78 43.6
Thhalv10026799m.g Eutrema salsugineum HOM05D000020 ORTHO05D002694 3.1e-07 60.1 71 43.7
THA.LOC104826599 Tarenaya hassleriana HOM05D000020 ORTHO05D002694 3.1e-07 60.1 71 43.7
AT3G61810 Arabidopsis thaliana HOM05D000020 ORTHO05D014328 4.1e-07 59.7 78 42.3
Medtr3g080410 Medicago truncatula HOM05D000020 ORTHO05D002694 4.1e-07 59.7 74 39.2
BcaB06g26857 Brassica carinata HOM05D000020 ORTHO05D002694 5.3e-07 59.3 71 42.3
A07p06440 Brassica napus HOM05D000020 ORTHO05D002694 5.3e-07 59.3 71 42.3
BraA07t28435Z Brassica rapa HOM05D000020 ORTHO05D002694 5.3e-07 59.3 71 42.3
Thhalv10002515m.g Eutrema salsugineum HOM05D000020 ORTHO05D002694 5.3e-07 59.3 71 42.3
Thhalv10006482m.g Eutrema salsugineum HOM05D000020 ORTHO05D014328 5.3e-07 59.3 76 42.1
TPR.G29034 Trifolium pratense HOM05D000020 ORTHO05D002694 6.9e-07 58.9 74 40.5
A03p14200 Brassica napus HOM05D000020 ORTHO05D002694 9.1e-07 58.5 71 40.8
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 9.1e-07 58.5 71 40.8
Sp3g24260 Schrenkiella parvula HOM05D000020 ORTHO05D002694 9.1e-07 58.5 71 40.8
BcaC06g35930 Brassica carinata HOM05D000020 ORTHO05D002694 1.2e-06 58.2 71 40.8
C07p09580 Brassica napus HOM05D000020 ORTHO05D002694 1.2e-06 58.2 71 40.8
BolC7t41391H Brassica oleracea HOM05D000020 ORTHO05D002694 1.2e-06 58.2 71 40.8
Sp5g01560 Schrenkiella parvula HOM05D000020 ORTHO05D014328 1.2e-06 58.2 76 40.8
Cpa.g.sc132.21 Carica papaya HOM05D000020 ORTHO05D002694 1.5e-06 57.8 71 43.7
MD09G1113900 Malus domestica HOM05D000020 ORTHO05D002694 1.5e-06 57.8 71 42.3
Psat5g111640 Pisum sativum HOM05D000020 ORTHO05D002694 1.5e-06 57.8 74 37.8
C03p16610 Brassica napus HOM05D000020 ORTHO05D002694 2.0e-06 57.4 71 39.4
FAN25G2916 Fragaria x ananassa HOM05D000020 ORTHO05D007189 2.0e-06 57.4 74 44.6
Mapoly0031s0056 Marchantia polymorpha HOM05D000020 ORTHO05D000282 2.0e-06 57.4 84 36.9
Rhsim04G0050500 Rhododendron simsii HOM05D000020 ORTHO05D002694 2.0e-06 57.4 71 40.8
BcaC01g06352 Brassica carinata HOM05D000020 ORTHO05D002694 2.6e-06 57.0 71 39.4
Aa31sc209G110 Aethionema arabicum HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 39.4
AL7G26010 Arabidopsis lyrata HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 40.8
MSTRG.6953 Avicennia marina HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 40.8
BcaC03g14255 Brassica carinata HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 39.4
A02p09810 Brassica napus HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 39.4
C02p16350 Brassica napus HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 39.4
BraA02t06045Z Brassica rapa HOM05D000020 ORTHO05D002694 3.4e-06 56.6 71 39.4
AT4G26830 Arabidopsis thaliana HOM05D000020 ORTHO05D002694 4.5e-06 56.2 71 39.4
BcaB01g04350 Brassica carinata HOM05D000020 ORTHO05D002694 4.5e-06 56.2 71 39.4
Carub.0005s2855 Capsella rubella HOM05D000020 ORTHO05D014328 4.5e-06 56.2 78 39.7
Aa31LG10G15800 Aethionema arabicum HOM05D000020 ORTHO05D014328 5.9e-06 55.8 75 42.7
BcaB05g22189 Brassica carinata HOM05D000020 ORTHO05D002694 5.9e-06 55.8 71 39.4
BcaC08g45170 Brassica carinata HOM05D000020 ORTHO05D014328 5.9e-06 55.8 85 40.0
A07p25770 Brassica napus HOM05D000020 ORTHO05D014328 5.9e-06 55.8 85 40.0
C06p27990 Brassica napus HOM05D000020 ORTHO05D014328 5.9e-06 55.8 85 40.0
BolC3t14080H Brassica oleracea HOM05D000020 ORTHO05D002694 5.9e-06 55.8 71 39.4
BolC6t37960H Brassica oleracea HOM05D000020 ORTHO05D014328 5.9e-06 55.8 85 40.0
BraA07t30217Z Brassica rapa HOM05D000020 ORTHO05D014328 5.9e-06 55.8 85 40.0
MD17G1104000 Malus domestica HOM05D000020 ORTHO05D002694 5.9e-06 55.8 71 40.8
BcaC08g45169 Brassica carinata HOM05D000020 ORTHO05D014328 7.7e-06 55.5 85 38.8
CARHR103380 Cardamine hirsuta HOM05D000020 ORTHO05D002694 7.7e-06 55.5 102 36.3
Eucgr.K02113 Eucalyptus grandis HOM05D000020 ORTHO05D002192 7.7e-06 55.5 72 40.3
Os08g0525800 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D002192 7.7e-06 55.5 72 40.3


User provided reference genes

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