Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 9.3e-95 350.1 168 100.0
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.9e-63 246.1 123 95.9
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 3.1e-26 122.5 74 75.7
Rhsim02G0133100 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.2e-23 112.1 65 87.7
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.2e-23 111.3 74 74.3
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.8e-21 104.4 74 71.6
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.0e-20 103.2 75 69.3
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.4e-20 102.4 74 64.9
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.3e-16 89.7 76 57.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 6.6e-16 88.2 76 60.5
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.1e-15 87.4 76 59.2
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.1e-15 87.4 76 59.2
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.5e-15 86.3 73 57.5
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 5.6e-15 85.1 77 63.6
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 2.1e-14 83.2 73 60.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.8e-14 82.8 72 56.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 3.6e-14 82.4 75 56.0
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 6.1e-14 81.6 73 60.3
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 8.0e-14 81.3 73 57.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.0e-13 80.9 72 58.3
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.3e-13 79.7 73 57.5
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.0e-13 79.3 74 56.8
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 4.0e-13 79.0 74 54.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.2e-13 78.6 73 57.5
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.2e-13 78.6 73 57.5
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 6.8e-13 78.2 74 56.8
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.0e-12 76.6 75 57.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.0e-12 76.6 75 50.7
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 3.4e-12 75.9 73 56.2
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 4.4e-12 75.5 69 55.1
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 4.4e-12 75.5 78 52.6
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.4e-12 75.5 74 55.4
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 7.5e-12 74.7 76 55.3
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 7.5e-12 74.7 75 54.7
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 7.5e-12 74.7 82 48.8
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 9.8e-12 74.3 75 49.3
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.7e-11 73.6 75 54.7
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 2.2e-11 73.2 66 57.6
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 2.2e-11 73.2 73 50.7
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 2.2e-11 73.2 73 54.8
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 4.9e-11 72.0 75 48.0
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.9e-11 72.0 74 48.6
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 8.3e-11 71.2 77 50.6
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.1e-10 70.9 74 51.4
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.8e-10 70.1 74 52.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.4e-10 69.7 74 54.1
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.4e-10 69.7 75 50.7
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.4e-10 69.7 77 49.4
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.2e-10 69.3 74 54.1
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.2e-10 69.3 77 49.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 5.4e-10 68.6 74 50.0
RhsimUnG0063500 Rhododendron simsii HOM05D001994 ORTHO05D001954 7.0e-10 68.2 48 72.9
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 9.2e-10 67.8 85 49.4
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 9.2e-10 67.8 74 44.6
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.2e-10 67.8 75 48.0
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-09 67.4 68 54.4
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.2e-09 67.4 74 50.0
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.6e-09 67.0 74 51.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.6e-09 67.0 73 46.6
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.6e-09 67.0 78 48.7
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.6e-09 67.0 78 48.7
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.0e-09 66.6 68 54.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.7e-09 66.2 76 50.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.7e-09 66.2 68 54.4
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 2.7e-09 66.2 69 52.2
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.6e-09 65.5 76 46.1
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.8e-09 64.7 77 44.2
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.8e-09 64.7 76 52.6
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.3e-08 63.9 80 48.8
vmacro10213 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 1.3e-08 63.9 76 48.7
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.7e-08 63.5 75 49.3
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.7e-08 63.5 75 46.7
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 2.3e-08 63.2 76 47.4
Rhsim09G0168700 Rhododendron simsii HOM05D001009 ORTHO05D000829 3.0e-08 62.8 49 65.3
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 3.9e-08 62.4 73 49.3
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 3.9e-08 62.4 74 43.2
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 6.6e-08 61.6 75 48.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 6.6e-08 61.6 74 45.9
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 6.6e-08 61.6 74 50.0
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 8.6e-08 61.2 78 42.3
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.6e-08 61.2 78 48.7
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 1.5e-07 60.5 68 50.0
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.5e-07 60.5 68 50.0
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.5e-07 60.5 81 46.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.5e-07 60.5 77 42.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 2.5e-07 59.7 77 46.8
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.3e-07 59.3 90 42.2
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.3e-07 58.9 73 46.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 5.6e-07 58.5 78 44.9
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 9.5e-07 57.8 78 46.2
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 9.5e-07 57.8 77 46.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-06 57.4 75 45.3
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-06 57.4 75 45.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.1e-06 56.6 73 43.8
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-06 56.6 68 51.5
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-06 56.6 68 51.5
Hma1.2p1_0026F.1_g016350 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 2.1e-06 56.6 48 64.6
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.1e-06 56.6 75 46.7
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.8e-06 56.2 78 41.0
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 3.6e-06 55.8 72 50.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.6e-06 55.8 77 44.2
Actinidia02375 Actinidia chinensis HOM05D001009 ORTHO05D000829 4.7e-06 55.5 41 68.3
CSS0049537 Camellia sinensis var. sinensis HOM05D001009 ORTHO05D000829 4.7e-06 55.5 42 66.7
Hma1.2p1_2902F.1_g330050 Hydrangea macrophylla HOM05D001009 ORTHO05D000829 6.2e-06 55.1 48 62.5
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 6.2e-06 55.1 69 44.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 6.2e-06 55.1 73 38.4
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 8.0e-06 54.7 69 47.8
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 8.0e-06 54.7 78 44.9


User provided reference genes

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