Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 1.0e-64 250.0 131 100.0
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 1.8e-21 106.3 101 59.4
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.5e-18 95.9 131 49.6
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 2.5e-18 95.9 105 50.5
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 2.7e-17 92.4 95 54.7
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.7e-17 92.4 99 53.5
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 3.9e-16 88.6 108 50.0
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.3e-15 85.5 91 56.0
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 3.3e-15 85.5 105 44.8
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.3e-14 83.6 111 45.9
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 2.1e-14 82.8 112 45.5
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 4.8e-14 81.6 153 43.8
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 4.8e-14 81.6 153 43.8
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 8.2e-14 80.9 109 46.8
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-13 80.5 106 42.5
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.4e-13 80.1 104 45.2
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.4e-13 80.1 103 46.6
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 1.8e-13 79.7 118 45.8
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 5.3e-13 78.2 119 40.3
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 6.9e-13 77.8 108 44.4
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 6.9e-13 77.8 90 53.3
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 9.0e-13 77.4 90 50.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.6e-12 75.9 105 45.7
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.6e-12 75.9 100 45.0
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 3.4e-12 75.5 121 45.5
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.4e-12 75.5 98 43.9
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.4e-12 75.5 125 48.8
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 4.5e-12 75.1 94 43.6
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 5.9e-12 74.7 131 42.7
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.9e-12 74.7 131 42.7
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 5.9e-12 74.7 110 44.5
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 5.9e-12 74.7 104 42.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 7.6e-12 74.3 102 45.1
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 1.0e-11 73.9 94 44.7
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 1.0e-11 73.9 104 44.2
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 1.0e-11 73.9 117 41.0
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.3e-11 73.6 107 45.8
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.7e-11 73.2 114 44.7
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.9e-11 72.4 131 44.3
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.0e-11 71.6 114 43.9
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 1.1e-10 70.5 108 46.3
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.1e-10 70.5 132 43.9
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.1e-10 70.5 95 41.1
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.9e-10 69.7 114 43.0
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.2e-10 68.9 114 43.0
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 3.2e-10 68.9 107 38.3
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 5.5e-10 68.2 127 37.8
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 5.5e-10 68.2 104 42.3
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 9.3e-10 67.4 153 37.9
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 2.1e-09 66.2 119 44.5
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 2.7e-09 65.9 95 44.2
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 3.5e-09 65.5 111 41.4
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 3.5e-09 65.5 110 40.9
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 4.6e-09 65.1 118 39.8
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 6.1e-09 64.7 103 40.8
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 6.1e-09 64.7 102 43.1
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 7.9e-09 64.3 110 35.5
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 1.3e-08 63.5 111 36.9
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 1.3e-08 63.5 135 37.8
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.8e-08 63.2 58 56.9
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 2.3e-08 62.8 82 43.9
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 8.7e-08 60.8 108 39.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-07 60.5 113 34.5
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-07 60.5 113 34.5
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.1e-07 60.5 114 36.8
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.5e-07 60.1 118 39.0
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.9e-07 59.7 65 52.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 2.5e-07 59.3 78 47.4
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.7e-07 58.2 74 45.9
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 7.4e-07 57.8 78 43.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 9.7e-07 57.4 78 51.3
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 2.2e-06 56.2 89 42.7
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 2.8e-06 55.8 111 34.2
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 3.7e-06 55.5 35 77.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 3.7e-06 55.5 117 38.5
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 3.7e-06 55.5 110 39.1
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 4.8e-06 55.1 92 42.4
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 4.8e-06 55.1 39 71.8
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 4.8e-06 55.1 62 46.8
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 6.3e-06 54.7 92 42.4
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 6.3e-06 54.7 83 37.3
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.3e-06 54.7 118 35.6
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 6.3e-06 54.7 118 35.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 8.2e-06 54.3 51 51.0


User provided reference genes

Program Settings