Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.8e-48 194.9 96 100.0
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.5e-44 182.6 96 93.8
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 1.7e-21 105.9 97 62.9
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.5e-20 102.1 94 62.8
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 2.8e-19 98.6 77 68.8
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.4e-18 96.3 104 55.8
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 5.8e-17 90.9 91 49.5
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.7e-16 88.2 91 53.8
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 4.9e-16 87.8 92 53.3
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 6.4e-16 87.4 91 48.4
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 6.4e-16 87.4 101 53.5
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 6.4e-16 87.4 101 53.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 8.3e-16 87.0 96 50.0
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.2e-15 85.1 79 54.4
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 3.2e-15 85.1 101 53.5
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 4.1e-15 84.7 92 51.1
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 7.1e-15 84.0 99 49.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 7.1e-15 84.0 99 49.5
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 7.1e-15 84.0 91 52.7
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 7.1e-15 84.0 92 53.3
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 9.2e-15 83.6 96 47.9
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.2e-14 83.2 91 53.8
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.1e-14 82.4 99 49.5
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 2.7e-14 82.0 83 59.0
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 3.5e-14 81.6 96 52.1
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 4.6e-14 81.3 92 52.2
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 7.8e-14 80.5 90 52.2
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 7.8e-14 80.5 91 48.4
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 7.8e-14 80.5 98 49.0
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.3e-13 79.7 92 50.0
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.7e-13 79.3 98 50.0
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.7e-13 79.3 68 66.2
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.3e-13 79.0 96 46.9
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 3.0e-13 78.6 84 52.4
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 3.0e-13 78.6 99 45.5
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 3.9e-13 78.2 91 51.6
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 5.1e-13 77.8 91 48.4
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 6.6e-13 77.4 92 50.0
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 6.6e-13 77.4 92 48.9
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 8.6e-13 77.0 98 51.0
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.1e-12 76.6 107 49.5
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.5e-12 76.3 98 49.0
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 2.5e-12 75.5 90 46.7
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 4.3e-12 74.7 64 57.8
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 5.6e-12 74.3 103 50.5
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.6e-12 74.3 51 72.5
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.6e-12 74.3 90 50.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 5.6e-12 74.3 88 48.9
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.6e-11 72.8 91 47.3
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 2.1e-11 72.4 98 44.9
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 3.6e-11 71.6 84 51.2
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 3.6e-11 71.6 98 43.9
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 8.1e-11 70.5 102 46.1
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 8.1e-11 70.5 103 46.6
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 1.1e-10 70.1 100 43.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.1e-10 70.1 76 52.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.4e-10 69.7 99 41.4
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 4.0e-10 68.2 85 42.4
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.0e-10 68.2 90 40.0
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 6.8e-10 67.4 101 46.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 8.9e-10 67.0 88 39.8
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 4.4e-09 64.7 58 53.4
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 5.8e-09 64.3 86 46.5
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.8e-09 64.3 69 53.6
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 7.6e-09 63.9 46 67.4
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 9.9e-09 63.5 81 45.7
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 9.9e-09 63.5 100 40.0
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.3e-08 63.2 102 50.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 1.3e-08 63.2 102 50.0
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.7e-08 62.8 97 41.2
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 2.9e-08 62.0 99 38.4
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.9e-08 61.2 47 55.3
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 6.4e-08 60.8 86 46.5
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 6.4e-08 60.8 66 53.0
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 6.4e-08 60.8 86 45.3
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 8.4e-08 60.5 60 55.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 1.4e-07 59.7 100 44.0
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.9e-07 59.3 88 43.2
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.4e-07 58.9 65 49.2
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 3.2e-07 58.5 78 42.3
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 5.4e-07 57.8 100 49.0
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 5.4e-07 57.8 48 66.7
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.6e-06 56.2 96 41.7
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.6e-06 56.2 86 41.9
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.1e-06 55.8 50 52.0
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 2.1e-06 55.8 58 53.4
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 2.7e-06 55.5 96 41.7
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 3.5e-06 55.1 91 37.4
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 4.6e-06 54.7 83 44.6
Os01g0847100 Oryza sativa ssp. japonica HOM05D042109 ORTHO05D037005 4.6e-06 54.7 56 42.9
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 6.0e-06 54.3 96 40.6
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 6.0e-06 54.3 96 40.6
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 6.0e-06 54.3 48 54.2
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 6.0e-06 54.3 47 51.1
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 7.8e-06 53.9 84 44.0


User provided reference genes

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