Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.8e-48 194.9 96 100.0
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 3.3e-44 181.4 96 93.8
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 2.1e-19 99.0 97 59.8
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.4e-18 96.3 94 57.4
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 6.8e-18 94.0 77 66.2
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.4e-17 91.7 104 52.9
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.1e-15 86.7 84 57.1
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 9.2e-15 83.6 91 47.3
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.1e-14 82.4 92 52.2
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 2.7e-14 82.0 91 48.4
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 2.7e-14 82.0 96 47.9
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 4.6e-14 81.3 91 50.5
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.6e-14 81.3 79 53.2
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 6.0e-14 80.9 96 46.9
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 7.8e-14 80.5 101 50.5
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 7.8e-14 80.5 101 50.5
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 1.0e-13 80.1 92 48.9
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.3e-13 79.7 90 51.1
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.3e-13 79.7 77 58.4
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.7e-13 79.3 83 55.4
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 3.0e-13 78.6 92 50.0
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 3.0e-13 78.6 91 52.7
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 3.9e-13 78.2 101 50.5
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 8.6e-13 77.0 90 50.0
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 8.6e-13 77.0 98 48.0
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.1e-12 76.6 92 50.0
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.5e-12 75.5 98 45.9
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.5e-12 75.5 99 46.5
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.5e-12 75.5 99 46.5
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 4.3e-12 74.7 92 47.8
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 5.6e-12 74.3 68 63.2
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 5.6e-12 74.3 91 45.1
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 5.6e-12 74.3 78 53.8
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 7.3e-12 73.9 91 47.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.2e-11 73.2 99 45.5
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.2e-11 73.2 99 43.4
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 2.1e-11 72.4 92 47.8
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.8e-11 72.0 98 45.9
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.6e-11 71.6 97 44.3
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.6e-11 71.6 107 47.7
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.7e-11 71.2 91 44.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.2e-11 70.9 98 44.9
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 6.2e-11 70.9 96 43.8
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 6.2e-11 70.9 88 47.7
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.1e-11 70.5 107 47.7
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.1e-10 70.1 90 43.3
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.4e-10 68.9 91 48.4
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.4e-10 68.9 98 46.9
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 3.1e-10 68.6 64 54.7
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.0e-10 68.2 103 47.6
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 4.0e-10 68.2 100 43.0
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 8.9e-10 67.0 84 48.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.2e-09 66.6 91 42.9
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.2e-09 66.6 76 51.3
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 2.0e-09 65.9 102 44.1
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 2.6e-09 65.5 85 40.0
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 3.4e-09 65.1 59 57.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.4e-09 65.1 99 38.4
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 4.4e-09 64.7 103 44.7
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 1.3e-08 63.2 101 44.6
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 1.7e-08 62.8 97 41.2
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 1.7e-08 62.8 59 55.9
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.9e-08 62.0 102 50.0
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 2.9e-08 62.0 88 37.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.9e-08 62.0 90 36.7
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 3.8e-08 61.6 86 45.3
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 4.9e-08 61.2 46 65.2
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 6.4e-08 60.8 102 48.0
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 6.4e-08 60.8 79 48.1
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 8.4e-08 60.5 58 51.7
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 2.4e-07 58.9 100 39.0
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 3.2e-07 58.5 47 53.2
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.2e-07 58.5 86 45.3
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 9.3e-07 57.0 100 34.0
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 9.3e-07 57.0 86 44.2
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 1.2e-06 56.6 86 44.2
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 1.2e-06 56.6 96 43.8
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 2.1e-06 55.8 82 42.7
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 2.1e-06 55.8 78 41.0
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 2.7e-06 55.5 100 47.0
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 4.6e-06 54.7 83 42.2
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 4.6e-06 54.7 100 42.0
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 7.8e-06 53.9 64 45.3


User provided reference genes

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