Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 8.6e-108 393.7 198 100.0
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 9.9e-96 353.6 198 89.4
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.5e-67 259.2 206 70.9
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.1e-62 243.8 190 67.9
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.9e-59 233.0 203 64.0
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 8.2e-58 227.6 198 67.2
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.8e-57 226.5 192 65.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.6e-56 222.6 203 64.0
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 2.9e-55 219.2 191 63.9
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.9e-55 219.2 199 60.3
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 5.0e-55 218.4 206 61.7
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 1.1e-54 217.2 203 64.5
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.1e-54 217.2 198 62.1
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.9e-54 216.5 199 62.8
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 3.2e-54 215.7 197 62.4
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 5.5e-54 214.9 205 62.0
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 1.2e-53 213.8 199 62.8
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.1e-53 213.0 202 62.4
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.5e-53 212.2 204 61.3
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.0e-52 210.7 201 59.2
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 3.9e-52 208.8 204 61.8
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 8.7e-52 207.6 202 60.4
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 8.7e-52 207.6 199 58.8
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.1e-51 207.2 200 59.0
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 2.5e-51 206.1 177 68.9
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-51 206.1 202 57.4
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-51 206.1 202 57.4
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.3e-51 205.7 202 57.4
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 9.7e-51 204.1 201 58.2
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 9.7e-51 204.1 201 58.2
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 9.7e-51 204.1 201 58.2
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.3e-50 203.8 204 58.3
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.8e-50 202.6 200 58.0
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 3.7e-50 202.2 203 58.6
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.4e-49 200.3 207 59.9
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 1.8e-49 199.9 201 57.7
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 4.1e-49 198.7 213 61.0
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 6.9e-49 198.0 199 60.8
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 1.2e-48 197.2 200 55.5
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.0e-48 196.4 206 58.3
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 4.5e-48 195.3 201 57.7
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 7.7e-48 194.5 200 54.5
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 1.3e-47 193.7 201 56.2
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.7e-47 193.4 200 55.0
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.9e-47 192.6 208 55.8
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.9e-47 192.6 208 55.8
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 3.8e-47 192.2 196 58.7
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.0e-47 191.8 209 56.9
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 6.5e-47 191.4 201 53.7
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 8.5e-47 191.0 208 55.8
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.1e-46 190.7 208 55.8
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 1.4e-46 190.3 208 55.8
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.4e-46 190.3 198 55.6
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.5e-46 189.5 209 57.4
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 2.5e-46 189.5 211 55.9
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.5e-46 189.5 182 59.9
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.2e-46 189.1 184 57.6
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 4.2e-46 188.7 205 55.6
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 4.2e-46 188.7 208 55.3
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 7.2e-46 188.0 191 57.1
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.6e-45 186.8 200 56.0
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 4.6e-45 185.3 192 59.9
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 6.1e-45 184.9 213 54.9
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 7.9e-45 184.5 206 55.3
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.4e-44 183.7 204 54.4
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 1.4e-44 183.7 211 54.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.3e-44 183.0 204 53.9
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 2.3e-44 183.0 200 56.0
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.0e-44 182.6 202 55.4
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.1e-43 180.6 203 53.7
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 3.3e-43 179.1 205 56.6
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.3e-43 179.1 204 53.4
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 4.3e-43 178.7 199 55.3
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 5.7e-43 178.3 202 54.5
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.7e-42 176.8 202 56.9
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.7e-42 176.8 184 58.2
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.8e-42 176.0 184 54.9
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 6.3e-42 174.9 201 54.7
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.1e-41 174.1 199 53.3
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.8e-41 173.3 211 51.7
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.4e-41 172.9 199 53.3
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.3e-41 171.8 209 51.2
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 6.9e-41 171.4 188 53.7
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.5e-40 170.2 200 53.0
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.0e-40 169.9 208 51.9
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.6e-40 169.5 208 51.4
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 5.9e-40 168.3 158 62.0
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 7.7e-40 167.9 195 54.9
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 1.3e-39 167.2 204 51.5
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 1.7e-39 166.8 163 57.1
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.2e-39 166.4 211 50.2
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 2.9e-39 166.0 208 54.3
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.8e-39 165.6 225 49.3
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 3.8e-39 165.6 168 58.9
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.0e-39 165.2 213 50.2
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 1.1e-38 164.1 193 53.9
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 1.1e-38 164.1 212 51.9
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.4e-38 163.7 213 49.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 4.2e-38 162.2 207 50.7
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 4.2e-38 162.2 136 67.6
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 5.5e-38 161.8 200 52.0
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 7.2e-38 161.4 205 53.7
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 9.4e-38 161.0 203 48.3
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 2.1e-37 159.8 210 49.5
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.1e-37 159.8 195 49.7
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 3.6e-37 159.1 150 62.7
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 4.7e-37 158.7 190 52.6
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.1e-37 158.3 209 51.7
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.9e-37 157.9 201 49.8
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 7.9e-37 157.9 153 63.4
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 1.0e-36 157.5 159 60.4
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 2.3e-36 156.4 164 59.8
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 1.1e-35 154.1 209 49.8
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 1.5e-35 153.7 213 48.4
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 3.3e-35 152.5 158 57.6
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 4.4e-35 152.1 216 50.0
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 4.8e-34 148.7 162 54.9
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 8.2e-34 147.9 172 52.3
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.4e-33 147.1 165 52.7
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.8e-33 146.7 136 62.5
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 4.1e-33 145.6 198 50.5
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 7.0e-33 144.8 193 56.0
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 1.2e-32 144.1 179 52.5
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.6e-32 142.9 253 43.1
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 3.5e-32 142.5 130 63.1
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 4.5e-32 142.1 145 57.9
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 5.9e-32 141.7 209 49.3
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 7.7e-32 141.4 205 48.8
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 2.2e-31 139.8 205 48.3
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 2.9e-31 139.4 205 47.3
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 6.5e-31 138.3 124 62.1
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 8.5e-31 137.9 201 47.3
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.9e-30 136.7 204 46.1
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 2.5e-30 136.3 226 47.3
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 4.2e-30 135.6 210 45.7
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 5.5e-30 135.2 210 46.2
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 5.5e-30 135.2 169 49.7
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 7.2e-30 134.8 132 60.6
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-29 134.0 185 50.3
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 1.6e-29 133.7 191 48.7
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.7e-29 132.9 189 49.2
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.0e-28 131.0 200 45.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 3.0e-28 129.4 186 48.4
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 6.7e-28 128.3 211 45.0
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 8.8e-28 127.9 168 53.0
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 9.7e-27 124.4 181 48.6
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 2.2e-26 123.2 207 43.0
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 1.8e-25 120.2 199 44.2
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 4.1e-25 119.0 175 48.6
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 9.1e-25 117.9 166 49.4
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 1.2e-24 117.5 155 47.7
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 5.0e-23 112.1 161 49.1
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 5.0e-23 112.1 155 49.7
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 1.1e-22 110.9 202 42.1
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 1.5e-22 110.5 153 51.6
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 3.2e-22 109.4 144 52.8
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 4.2e-22 109.0 155 49.7
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.5e-22 108.6 143 56.6
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 7.2e-22 108.2 185 47.0
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 9.4e-22 107.8 144 54.9
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 2.7e-21 106.3 216 38.4
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 6.1e-21 105.1 144 54.9
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 1.4e-20 104.0 133 51.1
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 8.8e-20 101.3 156 48.1
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 2.6e-19 99.8 171 45.0
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 7.5e-19 98.2 111 57.7
Actinidia08370 Actinidia chinensis HOM05D003527 ORTHO05D004099 9.8e-19 97.8 143 44.1
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 1.3e-18 97.4 115 55.7
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 2.8e-18 96.3 215 38.6
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 3.7e-18 95.9 207 39.1
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 6.3e-18 95.1 114 57.0
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 2.7e-16 89.7 208 38.0
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 1.0e-15 87.8 205 35.6
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.7e-15 87.0 208 36.5
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 2.2e-15 86.7 166 38.6
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 8.5e-15 84.7 162 40.7
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 4.7e-13 79.0 215 34.4
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 1.0e-12 77.8 172 40.1
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 9.8e-11 71.2 129 42.6
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 4.9e-10 68.9 137 39.4
Lalb_Chr13g0291181 Lupinus albus HOM05D003527 ORTHO05D004099 9.2e-09 64.7 78 51.3
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 3.8e-07 59.3 144 35.4
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 6.6e-07 58.5 115 41.7
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 4.3e-06 55.8 170 35.3
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 4.3e-06 55.8 96 47.9
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 7.3e-06 55.1 104 37.5


User provided reference genes

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