Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.8e-133 479.2 229 100.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.0e-100 369.4 202 84.2
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.6e-94 349.7 233 75.5
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.5e-87 326.6 200 76.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 7.9e-81 304.3 232 65.1
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 3.0e-80 302.4 228 64.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.4e-79 298.5 212 65.1
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.7e-78 296.6 209 66.0
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 1.4e-77 293.5 226 63.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.8e-77 293.1 216 65.3
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 7.0e-77 291.2 222 63.5
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.5e-76 288.9 231 61.0
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 4.5e-76 288.5 209 67.0
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.3e-75 287.0 230 61.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.7e-75 286.6 223 63.7
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.2e-75 286.2 224 62.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.1e-74 283.9 222 61.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.4e-74 283.5 225 63.6
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 1.4e-74 283.5 232 62.9
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.2e-74 282.0 222 63.1
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.2e-74 281.2 232 61.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.2e-73 280.4 230 59.6
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 3.6e-73 278.9 223 62.3
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 4.7e-73 278.5 224 64.7
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.8e-72 276.6 213 62.9
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.3e-72 276.2 252 58.3
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.0e-72 275.8 206 64.1
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 5.2e-72 275.0 213 66.2
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 7.4e-71 271.2 184 70.1
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 7.4e-71 271.2 251 59.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.4e-71 271.2 216 59.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 9.7e-71 270.8 204 67.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 9.7e-71 270.8 219 60.3
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 9.7e-71 270.8 212 62.7
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 2.2e-70 269.6 219 62.1
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.8e-70 269.2 216 59.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.8e-70 268.5 224 58.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 6.3e-70 268.1 213 62.0
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 6.3e-70 268.1 216 58.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 8.2e-70 267.7 212 61.3
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.1e-69 267.3 211 62.1
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.8e-69 266.5 217 61.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 3.1e-69 265.8 218 60.6
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.1e-69 265.8 208 63.0
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.1e-69 265.8 213 61.0
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 9.1e-69 264.2 210 61.0
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.6e-68 263.5 228 59.6
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.6e-68 263.5 210 60.0
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 3.5e-68 262.3 215 60.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.5e-68 261.9 215 60.0
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.0e-67 260.8 219 60.3
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.3e-67 260.4 218 60.1
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.7e-67 260.0 219 60.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.2e-67 259.6 210 59.0
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 3.8e-67 258.8 224 58.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.0e-67 258.5 209 60.8
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 6.5e-67 258.1 224 58.0
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.5e-66 256.9 223 58.7
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.9e-66 256.5 220 59.5
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.5e-66 256.1 204 61.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 2.5e-66 256.1 224 58.0
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 5.5e-66 255.0 216 60.6
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 5.5e-66 255.0 204 59.3
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.2e-65 253.8 228 57.5
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.6e-65 253.4 259 51.0
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 3.6e-65 252.3 219 56.2
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 3.6e-65 252.3 223 58.3
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.7e-65 251.9 212 59.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.7e-65 251.9 187 67.9
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.4e-64 250.4 212 59.9
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.8e-64 250.0 212 58.5
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.0e-64 249.2 212 59.4
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.0e-64 249.2 224 58.5
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.0e-64 249.2 209 60.3
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 3.0e-64 249.2 211 59.2
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.0e-64 248.8 212 59.4
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 4.0e-64 248.8 212 59.4
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 4.0e-64 248.8 224 56.2
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 5.2e-64 248.4 232 55.2
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.2e-64 248.4 225 57.8
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 5.2e-64 248.4 204 60.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.2e-63 247.3 209 58.4
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.5e-63 246.9 210 57.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-63 246.9 212 59.4
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 5.7e-63 245.0 212 59.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.7e-63 244.2 201 58.2
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 9.7e-63 244.2 164 72.0
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.3e-62 243.8 207 59.9
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-62 243.4 212 58.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 2.8e-62 242.7 205 59.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.8e-62 241.9 215 57.7
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 6.3e-62 241.5 212 58.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 6.3e-62 241.5 210 57.1
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.4e-61 240.4 213 57.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.3e-61 238.4 226 54.9
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.7e-59 233.4 226 54.9
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.7e-59 233.4 220 54.5
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.5e-59 231.5 186 60.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 8.5e-59 231.1 217 56.2
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 8.5e-59 231.1 232 52.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.5e-58 229.6 205 57.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 4.2e-58 228.8 212 55.7
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 4.2e-58 228.8 243 49.4
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.5e-58 228.4 193 60.1
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 5.5e-58 228.4 239 51.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 7.2e-58 228.0 223 54.7
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.6e-57 225.7 239 51.5
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.7e-57 225.3 232 51.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 6.1e-57 224.9 223 52.9
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.1e-57 224.9 223 52.9
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 8.0e-57 224.6 224 54.9
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-56 224.2 223 52.9
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-56 223.8 266 46.2
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.3e-56 223.0 212 54.2
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 5.2e-56 221.9 201 57.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.8e-56 221.5 230 51.3
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 6.8e-56 221.5 207 53.1
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 8.8e-56 221.1 208 53.8
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.4e-55 219.2 223 52.5
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.8e-55 217.6 202 55.0
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.3e-54 217.2 208 54.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-54 216.9 209 53.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.8e-54 216.1 209 53.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 8.3e-54 214.5 227 52.9
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.4e-53 211.8 206 52.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 7.0e-53 211.5 146 66.4
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 9.1e-53 211.1 209 53.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.6e-52 210.3 206 53.4
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 3.5e-52 209.1 201 52.7
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.7e-51 206.8 195 52.3
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 8.6e-51 204.5 211 51.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.5e-50 203.0 193 53.4
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.3e-50 202.6 214 48.6
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.2e-49 200.7 191 53.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 3.6e-49 199.1 208 51.0
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-48 196.8 208 50.5
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.8e-48 196.8 202 50.0
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.6e-47 193.0 194 52.1
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.4e-47 192.6 137 66.4
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-46 190.3 226 46.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 6.3e-46 188.3 217 48.8
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-45 187.2 203 48.8
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.8e-45 186.8 217 48.4
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.5e-44 182.6 211 45.0
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-43 180.6 200 50.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 2.3e-43 179.9 207 48.8
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.3e-42 175.6 223 43.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.3e-42 175.6 223 43.5
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.6e-42 175.3 182 49.5
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.7e-38 163.7 249 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.7e-38 162.5 217 40.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.5e-36 156.0 135 54.8
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 3.0e-35 152.9 156 49.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.9e-34 150.2 188 45.2
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.8e-32 143.7 137 51.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.7e-30 136.0 138 50.7
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.9e-30 135.6 176 44.3
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 9.2e-29 131.3 139 48.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-28 131.0 213 38.5
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.6e-28 129.0 202 39.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.6e-25 119.4 144 44.4
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.8e-24 117.1 142 41.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.9e-21 107.1 75 68.0
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 5.4e-21 105.5 69 69.6
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.6e-19 98.6 158 38.6
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.6e-17 94.0 104 46.2
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 4.0e-16 89.4 70 60.0
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.0e-15 87.0 60 68.3
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 2.3e-11 73.6 110 36.4
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.3e-10 69.7 59 52.5
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 9.6e-10 68.2 53 56.6
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 6.2e-09 65.5 52 53.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-08 64.7 110 35.5
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 2.4e-08 63.5 53 52.8
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.0e-08 62.8 59 49.2
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 9.9e-07 58.2 70 41.4
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 9.9e-07 58.2 91 39.6
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 2.2e-06 57.0 63 47.6
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 4.9e-06 55.8 76 43.4
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 4.9e-06 55.8 72 48.6
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 8.4e-06 55.1 71 42.3


User provided reference genes

Program Settings