Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0184200 Rhododendron simsii HOM05D001535 ORTHO05D021155 6.5e-41 170.2 83 100.0
RhsimUnG0121400 Rhododendron simsii HOM05D001535 ORTHO05D004010 6.7e-22 107.1 50 100.0
RhsimUnG0121700 Rhododendron simsii HOM05D001535 ORTHO05D004010 1.5e-21 105.9 50 98.0
Cc02_g28350 Coffea canephora HOM05D001535 ORTHO05D004010 4.0e-14 81.3 50 74.0
CiPaw.13G007200 Carya illinoinensis HOM05D001535 ORTHO05D004010 5.2e-14 80.9 50 74.0
Cpa.g.sc125.30 Carica papaya HOM05D001535 ORTHO05D004010 2.0e-13 79.0 50 74.0
TWI09G1006 Tripterygium wilfordii HOM05D001535 ORTHO05D004010 2.0e-13 79.0 50 72.0
vmacro13686 Vaccinium macrocarpon HOM05D001535 ORTHO05D004010 2.0e-13 79.0 50 72.0
GSVIVG01032155001 Vitis vinifera HOM05D001535 ORTHO05D004010 3.4e-13 78.2 50 74.0
Actinidia19407 Actinidia chinensis HOM05D001535 ORTHO05D004010 4.4e-13 77.8 50 74.0
Ciclev10031748m.g Citrus clementina HOM05D001535 ORTHO05D004010 4.4e-13 77.8 50 76.0
COL.COLO4_04874 Corchorus olitorius HOM05D001535 ORTHO05D004010 4.4e-13 77.8 50 72.0
TAR369G0519 Trochodendron aralioides HOM05D001535 ORTHO05D004010 4.4e-13 77.8 50 74.0
TAR633G1865 Trochodendron aralioides HOM05D001535 ORTHO05D004010 4.4e-13 77.8 50 74.0
EL10Ac2g04347 Beta vulgaris HOM05D001535 ORTHO05D004010 5.7e-13 77.4 50 70.0
Rhsim07G0057300 Rhododendron simsii HOM05D001535 ORTHO05D004010 5.7e-13 77.4 50 72.0
Peaxi162Scf00019g00016 Petunia axillaris HOM05D001535 ORTHO05D004010 7.5e-13 77.0 50 72.0
TWI53G1786 Tripterygium wilfordii HOM05D001535 ORTHO05D004010 7.5e-13 77.0 50 70.0
Hund08393 Selenicereus undatus HOM05D001535 ORTHO05D004010 9.8e-13 76.6 50 70.0
vmacro20091 Vaccinium macrocarpon HOM05D001535 ORTHO05D004010 9.8e-13 76.6 50 74.0
AUR62023083 Chenopodium quinoa HOM05D001535 ORTHO05D004010 1.3e-12 76.3 50 68.0
Nitab4.5_0000707g0230 Nicotiana tabacum HOM05D001535 ORTHO05D004010 1.3e-12 76.3 50 72.0
Nitab4.5_0006340g0030 Nicotiana tabacum HOM05D001535 ORTHO05D004010 1.3e-12 76.3 50 72.0
QL04p008841 Quercus lobata HOM05D001535 ORTHO05D004010 1.3e-12 76.3 50 70.0
Thecc.01G407900 Theobroma cacao HOM05D001535 ORTHO05D004010 1.3e-12 76.3 50 70.0
ATR0332G035 Amborella trichopoda HOM05D001535 ORTHO05D004010 1.7e-12 75.9 50 70.0
Potri.009G058600 Populus trichocarpa HOM05D001535 ORTHO05D004010 1.7e-12 75.9 50 72.0
Thecc.01G408100 Theobroma cacao HOM05D001535 ORTHO05D004010 1.7e-12 75.9 50 70.0
Sabra16G0161900 Salix brachista HOM05D001535 ORTHO05D004010 2.2e-12 75.5 50 70.0
Sed0019833 Sechium edule HOM05D001535 ORTHO05D004010 2.2e-12 75.5 50 72.0
CsaV3_3G032010 Cucumis sativus L. HOM05D001535 ORTHO05D004010 2.8e-12 75.1 50 70.0
TAR623G1785 Trochodendron aralioides HOM05D000636 ORTHO05D004010 2.8e-12 75.1 50 70.0
ClCG10G012230 Citrullus lanatus HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 70.0
Dinv09326 Davidia involucrata HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 68.0
Gohir.A08G054900 Gossypium hirsutum HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 68.0
Gohir.D08G064400 Gossypium hirsutum HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 68.0
Gorai.004G066700 Gossypium raimondii HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 68.0
Manes.07G007800 Manihot esculenta HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 70.0
Manes.10G139400 Manihot esculenta HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 70.0
RhsimUnG0121500 Rhododendron simsii HOM05D001535 ORTHO05D004010 3.7e-12 74.7 50 66.0
ClCG10G012240 Citrullus lanatus HOM05D001535 ORTHO05D004010 4.8e-12 74.3 50 70.0
Thhalv10014014m.g Eutrema salsugineum HOM05D001535 ORTHO05D004010 4.8e-12 74.3 50 68.0
MBI02_g23137_MAGBIO Magnolia biondii HOM05D001535 ORTHO05D004010 4.8e-12 74.3 50 68.0
Potri.001G263700 Populus trichocarpa HOM05D001535 ORTHO05D004010 4.8e-12 74.3 50 68.0
PGR031G0628 Punica granatum HOM05D001535 ORTHO05D004010 4.8e-12 74.3 50 70.0
Atru.chr1.1082 Acer truncatum HOM05D001535 ORTHO05D004010 6.3e-12 73.9 50 70.0
MELO3C023990.2 Cucumis melo HOM05D001535 ORTHO05D004010 6.3e-12 73.9 50 68.0
Sabra09G0043000 Salix brachista HOM05D001535 ORTHO05D004010 6.3e-12 73.9 50 70.0
BcaB01g05340 Brassica carinata HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
BcaNung04191 Brassica carinata HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
A02p02120 Brassica napus HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
C02p06370 Brassica napus HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
BraA02t05184Z Brassica rapa HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
AUR62009400 Chenopodium quinoa HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 66.0
Nn2g15264 Nelumbo nucifera HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 70.0
Solyc01g087560.3 Solanum lycopersicum HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 70.0
Sopen01g034530 Solanum pennellii HOM05D001535 ORTHO05D004010 8.3e-12 73.6 50 70.0
Aqoxy1G00258 Aquilegia oxysepala HOM05D001535 ORTHO05D004010 1.1e-11 73.2 50 70.0
GSVIVG01033285001 Vitis vinifera HOM05D001535 ORTHO05D004010 1.1e-11 73.2 50 68.0
Lj9C638G10 Lonicera japonica HOM05D001535 ORTHO05D004010 1.4e-11 72.8 50 64.0
Prupe.2G019200 Prunus persica HOM05D001535 ORTHO05D004010 1.4e-11 72.8 50 70.0
THA.LOC104809850 Tarenaya hassleriana HOM05D001535 ORTHO05D004010 1.4e-11 72.8 50 66.0
Thecc.05G156300 Theobroma cacao HOM05D001535 ORTHO05D004010 1.4e-11 72.8 50 66.0
A03p06150 Brassica napus HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 66.0
CDE05G0501 Ceratophyllum demersum HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 66.0
Duzib133G1041 Durio zibethinus HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 66.0
Hma1.2p1_1328F.1_g275930 Hydrangea macrophylla HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 64.0
QL07p000219 Quercus lobata HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 64.0
Sp6g30310 Schrenkiella parvula HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 64.0
Sc10g0000200 Simmondsia chinensis HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 68.0
PGSC0003DMG400006855 Solanum tuberosum HOM05D001535 ORTHO05D004010 1.8e-11 72.4 50 68.0
Atru.chr11.2584 Acer truncatum HOM05D001535 ORTHO05D004010 2.4e-11 72.0 50 70.0
Duzib138G0178 Durio zibethinus HOM05D001535 ORTHO05D004010 2.4e-11 72.0 50 66.0
Nn7g36263 Nelumbo nucifera HOM05D001535 ORTHO05D004010 2.4e-11 72.0 50 68.0
Nitab4.5_0002645g0030 Nicotiana tabacum HOM05D001535 ORTHO05D004010 2.4e-11 72.0 51 70.6
Oeu049489.1 Olea europaea HOM05D001535 ORTHO05D004010 2.4e-11 72.0 50 66.0
Sed0009367 Sechium edule HOM05D001535 ORTHO05D004010 2.4e-11 72.0 50 66.0
C03p07160 Brassica napus HOM05D001535 ORTHO05D004010 3.1e-11 71.6 50 66.0
CsaV3_3G032020 Cucumis sativus L. HOM05D001535 ORTHO05D004010 3.1e-11 71.6 50 66.0
Eucgr.G03364 Eucalyptus grandis HOM05D001535 ORTHO05D004010 3.1e-11 71.6 50 64.0
Os07g0206700 Oryza sativa ssp. japonica HOM05D001535 ORTHO05D004010 3.1e-11 71.6 50 62.0
SGA_v2.0_scaffold4G02505 Striga asiatica HOM05D001535 ORTHO05D004010 3.1e-11 71.6 50 66.0
Zm00001eb303010 Zea mays HOM05D001535 ORTHO05D004010 4.1e-11 71.2 50 66.0
BcaC04g24264 Brassica carinata HOM05D001535 ORTHO05D004010 5.4e-11 70.9 50 62.0
MD07G1018200 Malus domestica HOM05D001535 ORTHO05D004010 5.4e-11 70.9 50 66.0
PSO339G0058 Papaver somniferum HOM05D001535 ORTHO05D004010 5.4e-11 70.9 50 66.0
COL.COLO4_28253 Corchorus olitorius HOM05D001535 ORTHO05D004010 7.0e-11 70.5 50 66.0
Eucgr.G03330 Eucalyptus grandis HOM05D001535 ORTHO05D004010 7.0e-11 70.5 50 66.0
MD02G1307400 Malus domestica HOM05D001535 ORTHO05D004010 7.0e-11 70.5 50 66.0
Nitab4.5_0002196g0070 Nicotiana tabacum HOM05D001535 ORTHO05D021155 7.0e-11 70.5 50 66.0
QL11p053824 Quercus lobata HOM05D001535 ORTHO05D004010 7.0e-11 70.5 50 62.0
Aa31LG9G6280 Aethionema arabicum HOM05D001535 ORTHO05D004010 9.1e-11 70.1 50 64.0
Lsat_1_v5_gn_1_105621 Lactuca sativa HOM05D001535 ORTHO05D004010 9.1e-11 70.1 50 64.0
SGA_v2.0_scaffold119G32749 Striga asiatica HOM05D001535 ORTHO05D004010 9.1e-11 70.1 50 66.0
MSTRG.20568 Avicennia marina HOM05D001535 ORTHO05D004010 1.2e-10 69.7 50 64.0
ECA234G3998 Erigeron canadensis HOM05D001535 ORTHO05D004010 1.6e-10 69.3 50 64.0
Eucgr.G03316 Eucalyptus grandis HOM05D001535 ORTHO05D004010 1.6e-10 69.3 50 66.0
PSO384G2229 Papaver somniferum HOM05D001535 ORTHO05D004010 1.6e-10 69.3 50 64.0
HPP92_023572 Vanilla planifolia HOM05D001535 ORTHO05D004010 1.6e-10 69.3 50 62.0
vmacro13385 Vaccinium macrocarpon HOM05D001535 ORTHO05D004010 2.0e-10 68.9 50 66.0
Haze_03160 Corylus avellana HOM05D001535 ORTHO05D004010 3.5e-10 68.2 71 52.1
FvH4_7g01390 Fragaria vesca HOM05D001535 ORTHO05D004010 3.5e-10 68.2 50 62.0
FAN06G1492 Fragaria x ananassa HOM05D001535 ORTHO05D004010 3.5e-10 68.2 50 62.0
HanXRQChr16g0524821 Helianthus annuus HOM05D001535 ORTHO05D004010 3.5e-10 68.2 50 62.0
Hma1.2p1_1328F.1_g275940 Hydrangea macrophylla HOM05D001535 ORTHO05D004010 3.5e-10 68.2 51 62.7
Manes.08G051000 Manihot esculenta HOM05D001535 ORTHO05D004010 3.5e-10 68.2 50 68.0
RcHm_v2.0_Chr1g0317111 Rosa chinensis HOM05D001535 ORTHO05D004010 3.5e-10 68.2 50 62.0
CAN.G219.54 Capsicum annuum HOM05D001535 ORTHO05D004010 4.5e-10 67.8 50 64.0
DCAR_022380 Daucus carota HOM05D001535 ORTHO05D004010 4.5e-10 67.8 50 62.0
FAN01G2128 Fragaria x ananassa HOM05D001535 ORTHO05D004010 4.5e-10 67.8 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1680 Anthoceros agrestis HOM05D001535 ORTHO05D004010 5.9e-10 67.4 50 60.0
CARHR199730 Cardamine hirsuta HOM05D001535 ORTHO05D004010 5.9e-10 67.4 49 63.3
Solyc10g080150.2 Solanum lycopersicum HOM05D001535 ORTHO05D004010 5.9e-10 67.4 50 68.0
Sopen10g030760 Solanum pennellii HOM05D001535 ORTHO05D004010 5.9e-10 67.4 50 68.0
VMungo1080G0569 Vigna mungo HOM05D001535 ORTHO05D004010 5.9e-10 67.4 45 68.9
CANSAT80G0784 Cannabis sativa HOM05D001535 ORTHO05D004010 7.7e-10 67.0 50 58.0
MBI04_g17677_MAGBIO Magnolia biondii HOM05D001535 ORTHO05D004010 7.7e-10 67.0 50 62.0
Rhsim05G0184300 Rhododendron simsii HOM05D001535 ORTHO05D004010 1.0e-09 66.6 50 66.0
HanXRQChr17g0563031 Helianthus annuus HOM05D001535 ORTHO05D004010 1.3e-09 66.2 50 60.0
Lalb_Chr25g0282831 Lupinus albus HOM05D001535 ORTHO05D004010 1.3e-09 66.2 45 64.4
PSO210G3275 Papaver somniferum HOM05D001535 ORTHO05D004010 1.3e-09 66.2 50 62.0
Psat5g210200 Pisum sativum HOM05D001535 ORTHO05D004010 1.3e-09 66.2 44 63.6
Migut.B01280 Erythranthe guttata HOM05D001535 ORTHO05D004010 1.7e-09 65.9 46 63.0
Ca_14485_v3 Cicer arietinum L. HOM05D001535 ORTHO05D004010 2.9e-09 65.1 44 65.9
Lj3g0004407 Lotus japonicus HOM05D001535 ORTHO05D004010 2.9e-09 65.1 44 68.2
Phvul.005G023700 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 2.9e-09 65.1 44 65.9
Sed0009889 Sechium edule HOM05D001535 ORTHO05D004010 2.9e-09 65.1 50 62.0
SMO119G0140 Selaginella moellendorffii HOM05D001535 ORTHO05D004010 3.8e-09 64.7 50 50.0
BolC3t13216H Brassica oleracea HOM05D001535 ORTHO05D021155 5.0e-09 64.3 44 63.6
Glyma.10G090500 Glycine max HOM05D001535 ORTHO05D004010 6.5e-09 63.9 44 65.9
Glyma.15G276300 Glycine max HOM05D001535 ORTHO05D004010 6.5e-09 63.9 44 65.9
Lj3g0026980 Lotus japonicus HOM05D001535 ORTHO05D004010 6.5e-09 63.9 44 63.6
BraA03t09948Z Brassica rapa HOM05D001535 ORTHO05D021155 8.5e-09 63.5 44 63.6
Glyma.12G009200 Glycine max HOM05D001535 ORTHO05D004010 8.5e-09 63.5 44 65.9
Medtr3g032530 Medicago truncatula HOM05D001535 ORTHO05D004010 1.1e-08 63.2 44 63.6
Phvul.011G011800 Phaseolus vulgaris HOM05D001535 ORTHO05D004010 1.1e-08 63.2 44 63.6
AL6G24320 Arabidopsis lyrata HOM05D001535 ORTHO05D004010 1.5e-08 62.8 44 61.4
AT5G13710 Arabidopsis thaliana HOM05D001535 ORTHO05D004010 1.5e-08 62.8 44 61.4
Carub.0006s1189 Capsella rubella HOM05D001535 ORTHO05D004010 1.5e-08 62.8 44 61.4
CAN.G128.10 Capsicum annuum HOM05D001535 ORTHO05D004010 1.5e-08 62.8 50 64.0
Lalb_Chr20g0107911 Lupinus albus HOM05D001535 ORTHO05D004010 1.5e-08 62.8 44 61.4
RcHm_v2.0_Chr3g0482121 Rosa chinensis HOM05D001535 ORTHO05D021155 1.5e-08 62.8 50 64.0
ATR0332G047 Amborella trichopoda HOM05D001535 ORTHO05D004010 3.2e-08 61.6 50 56.0
Actinidia39229 Actinidia chinensis HOM05D001535 ORTHO05D021155 4.2e-08 61.2 50 66.0
CSS0002789 Camellia sinensis var. sinensis HOM05D001535 ORTHO05D004010 4.2e-08 61.2 50 66.0
Glyma.12G009300 Glycine max HOM05D001535 ORTHO05D004010 4.2e-08 61.2 44 61.4
Rhsim07G0057500 Rhododendron simsii HOM05D001535 ORTHO05D004010 4.2e-08 61.2 50 56.0
Zm00001eb212480 Zea mays HOM05D001535 ORTHO05D004010 4.2e-08 61.2 50 50.0
arahy.Tifrunner.gnm1.ann1.5H33RN Arachis hypogaea HOM05D001535 ORTHO05D004010 7.2e-08 60.5 44 59.1
arahy.Tifrunner.gnm1.ann1.8BL5SS Arachis hypogaea HOM05D001535 ORTHO05D004010 7.2e-08 60.5 44 59.1
arahy.Tifrunner.gnm1.ann1.SDL2CG Arachis hypogaea HOM05D001535 ORTHO05D004010 7.2e-08 60.5 44 59.1
arahy.Tifrunner.gnm1.ann1.ZH6VX0 Arachis hypogaea HOM05D001535 ORTHO05D004010 7.2e-08 60.5 44 59.1
RhsimUnG0121800 Rhododendron simsii HOM05D001535 ORTHO05D004010 9.4e-08 60.1 50 60.0
Pp3c14_10470 Physcomitrium patens HOM05D001535 ORTHO05D004010 1.2e-07 59.7 50 50.0
Potri.016G056000 Populus trichocarpa HOM05D001535 ORTHO05D004010 1.6e-07 59.3 50 60.0
Rhsim07G0057400 Rhododendron simsii HOM05D001535 ORTHO05D004010 2.7e-07 58.5 50 58.0
THA.LOC104819087 Tarenaya hassleriana HOM05D001535 ORTHO05D004010 3.6e-07 58.2 50 62.0
CiPaw.14G001900 Carya illinoinensis HOM05D001535 ORTHO05D004010 8.0e-07 57.0 44 56.8
VMungo1127G0051 Vigna mungo HOM05D001535 ORTHO05D004010 8.0e-07 57.0 45 62.2
Mapoly0022s0086 Marchantia polymorpha HOM05D001535 ORTHO05D004010 1.4e-06 56.2 43 58.1
CBR_g10856 Chara braunii HOM05D001535 ORTHO05D004010 1.8e-06 55.8 46 58.7


User provided reference genes

Program Settings