Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 0.0e+00 1159.8 585 100.0
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 2.5e-248 862.1 519 81.9
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 2.5e-195 686.0 581 62.3
Lj7A376T34 Lonicera japonica HOM05D006715 ORTHO05D008345 4.9e-143 512.3 553 50.8
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 1.2e-136 491.1 547 49.0
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 6.4e-135 485.3 588 46.8
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 3.1e-129 466.5 564 46.6
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 4.5e-128 462.6 519 49.5
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 9.3e-126 454.9 549 48.1
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 4.6e-125 452.6 542 46.7
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 2.3e-124 450.3 557 44.3
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 3.3e-123 446.4 540 46.9
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 3.3e-123 446.4 549 46.6
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 5.6e-123 445.7 560 46.1
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 1.8e-121 440.7 519 44.3
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 5.8e-120 435.6 594 44.4
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 1.3e-119 434.5 546 44.9
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 1.4e-118 431.0 542 43.4
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 5.5e-118 429.1 595 42.5
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 1.2e-117 427.9 551 45.4
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.6e-117 427.6 555 45.9
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 3.5e-117 426.4 568 44.2
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.6e-117 426.0 551 45.2
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 1.0e-116 424.9 571 44.1
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 1.1e-115 421.4 567 44.3
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 1.1e-115 421.4 575 44.2
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 4.3e-115 419.5 513 46.4
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 1.6e-114 417.5 558 45.5
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 4.8e-114 416.0 565 44.6
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 6.2e-114 415.6 542 46.1
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 1.4e-113 414.5 574 44.4
Aqoxy5G00857 Aquilegia oxysepala HOM05D006715 ORTHO05D008345 1.8e-113 414.1 545 45.1
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 6.9e-113 412.1 593 42.7
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 9.0e-113 411.8 539 44.9
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 2.0e-112 410.6 563 42.5
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 2.0e-112 410.6 572 43.5
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.3e-111 407.9 567 43.2
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 9.3e-110 401.7 555 44.0
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 1.2e-109 401.4 558 44.3
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.6e-109 401.0 546 42.5
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 1.6e-109 401.0 491 46.0
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 7.9e-109 398.7 527 42.7
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 5.1e-108 396.0 574 43.9
Sed0009104 Sechium edule HOM05D006715 ORTHO05D008345 5.1e-108 396.0 557 44.0
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.5e-107 394.4 345 62.0
Eucgr.F02698 Eucalyptus grandis HOM05D006715 ORTHO05D008345 1.9e-107 394.0 550 42.5
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 5.7e-107 392.5 551 44.1
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 8.2e-106 388.7 542 41.3
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 9.0e-105 385.2 283 68.2
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 2.0e-104 384.0 395 50.9
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 3.4e-104 383.3 500 45.8
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 1.7e-103 380.9 558 42.8
DCAR_010095 Daucus carota HOM05D006715 ORTHO05D008345 2.2e-103 380.6 476 45.0
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 8.5e-103 378.6 594 42.8
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 4.2e-102 376.3 558 42.5
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 5.1e-100 369.4 571 41.3
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.1e-97 359.8 444 47.7
PGR042G1662 Punica granatum HOM05D006715 ORTHO05D008345 2.0e-96 357.5 543 42.9
unitig_21.g20147 Utricularia gibba HOM05D006715 ORTHO05D008345 2.1e-93 347.4 541 40.1
THA.LOC104804670 Tarenaya hassleriana HOM05D006715 ORTHO05D008345 4.7e-93 346.3 555 38.9
ECA232G1953 Erigeron canadensis HOM05D006715 ORTHO05D008345 7.9e-93 345.5 541 42.0
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 5.3e-89 332.8 421 47.7
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 9.1e-89 332.0 393 44.8
SalBow6G6609 Salvia bowleyana HOM05D006715 ORTHO05D008345 1.1e-81 308.5 542 39.3
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 5.3e-81 306.2 367 45.5
CDE12G0089 Ceratophyllum demersum HOM05D006715 ORTHO05D008345 1.2e-80 305.1 573 35.6
Thhalv10003905m.g Eutrema salsugineum HOM05D006715 ORTHO05D008345 2.6e-80 303.9 538 36.6
Sp1g32410 Schrenkiella parvula HOM05D006715 ORTHO05D008345 3.5e-80 303.5 538 36.1
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 5.5e-78 296.2 303 55.1
ATR0820G173 Amborella trichopoda HOM05D006715 ORTHO05D008345 9.4e-78 295.4 577 36.7
HanXRQChr11g0320291 Helianthus annuus HOM05D006715 ORTHO05D008345 1.2e-77 295.0 549 39.3
Aa31LG6G9940 Aethionema arabicum HOM05D006715 ORTHO05D008345 8.0e-77 292.4 566 35.3
EL10Ac1g01568 Beta vulgaris HOM05D006715 ORTHO05D008345 4.4e-75 286.6 546 37.5
AL1G51600 Arabidopsis lyrata HOM05D006715 ORTHO05D008345 9.7e-75 285.4 529 34.4
C09p00980 Brassica napus HOM05D006715 ORTHO05D008345 1.7e-71 274.6 536 35.8
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 1.7e-71 274.6 304 48.7
BolC9t53031H Brassica oleracea HOM05D006715 ORTHO05D008345 1.1e-70 271.9 537 35.0
AT1G43245 Arabidopsis thaliana HOM05D006715 ORTHO05D008345 3.2e-70 270.4 480 35.2
A09p00880 Brassica napus HOM05D006715 ORTHO05D008345 5.5e-70 269.6 540 34.4
BcaC04g24108 Brassica carinata HOM05D006715 ORTHO05D008345 9.4e-70 268.9 537 35.0
BraA09t35760Z Brassica rapa HOM05D006715 ORTHO05D008345 3.6e-69 266.9 542 34.5
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 1.4e-68 265.0 358 43.3
Gohir.D06G116900 Gossypium hirsutum HOM05D006715 ORTHO05D008345 1.2e-67 261.9 366 42.9
Zm00001eb083170 Zea mays HOM05D006715 ORTHO05D008345 1.8e-65 254.6 572 33.9
BcaB01g02294 Brassica carinata HOM05D006715 ORTHO05D008345 3.1e-65 253.8 541 33.3
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 5.4e-65 253.1 396 42.2
Os04g0423600 Oryza sativa ssp. japonica HOM05D006715 ORTHO05D008345 1.2e-61 241.9 553 32.7
SHI09071 Sapria himalayana HOM05D006715 ORTHO05D008345 8.0e-61 239.2 622 33.3
TAR381G1110 Trochodendron aralioides HOM05D006715 ORTHO05D008345 3.7e-58 230.3 315 41.9
Glyma.16G166333 Glycine max HOM05D006715 ORTHO05D008345 2.5e-54 217.6 256 46.5
AUR62040600 Chenopodium quinoa HOM05D006715 ORTHO05D008345 4.3e-54 216.9 296 42.9
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 2.1e-53 214.5 202 56.4
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 2.8e-53 214.2 307 40.4
Sc02g0003950 Simmondsia chinensis HOM05D006715 ORTHO05D008345 2.0e-48 198.0 248 45.6
Carub.0001s3453 Capsella rubella HOM05D006715 ORTHO05D008345 2.7e-48 197.6 361 36.0
CARHR035370 Cardamine hirsuta HOM05D006715 ORTHO05D008345 8.6e-47 192.6 313 36.4
Lalb_Chr01g0009551 Lupinus albus HOM05D006715 ORTHO05D008345 2.5e-46 191.0 230 47.8
Glyma.16G166267 Glycine max HOM05D006715 ORTHO05D008345 4.4e-43 180.3 216 50.9
Cc10_g14930 Coffea canephora HOM05D006715 ORTHO05D008345 3.7e-42 177.2 239 45.6
CSS0046539 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.2e-40 172.2 151 66.9
MBI17_g41095_MAGBIO Magnolia biondii HOM05D006715 ORTHO05D008345 4.6e-40 170.2 222 45.0
HPP92_009297 Vanilla planifolia HOM05D006715 ORTHO05D008345 4.0e-36 157.1 289 34.6
HPP92_009296 Vanilla planifolia HOM05D006715 ORTHO05D008345 2.6e-35 154.5 235 38.7
SEGI_34185 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 4.6e-32 143.7 441 27.0
Oeu031098.1 Olea europaea HOM05D006715 ORTHO05D008345 2.4e-28 131.3 204 42.2
SEGI_11470 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 1.5e-27 128.6 245 36.7
Gohir.1Z049355 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.4e-25 121.3 134 45.5
CSS0020713 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 1.6e-21 108.6 148 50.0
Medtr3g062560 Medicago truncatula HOM05D006715 ORTHO05D008345 2.7e-16 91.3 127 43.3
Carub.0001s3454 Capsella rubella HOM05D006715 ORTHO05D008345 1.6e-13 82.0 100 47.0
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 1.6e-08 65.5 188 33.5
arahy.Tifrunner.gnm1.ann1.12T13Y Arachis hypogaea HOM05D006715 ORTHO05D008345 1.0e-07 62.8 47 57.4
TAR381G0879 Trochodendron aralioides HOM05D006715 ORTHO05D008345 1.0e-07 62.8 172 25.6
SEGI_20433 Sequoiadendron giganteum HOM05D006715 ORTHO05D008345 5.1e-07 60.5 136 35.3
CSS0011701 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.3e-06 57.8 32 71.9


User provided reference genes

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