Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0175900 Rhododendron simsii HOM05D009218 ORTHO05D010069 2.5e-74 282.0 136 100.0
Dinv05728 Davidia involucrata HOM05D009218 ORTHO05D010069 1.7e-22 109.8 126 52.4
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.0e-14 84.0 125 41.6
QL03p028391 Quercus lobata HOM05D011447 ORTHO05D010069 2.2e-14 82.8 112 48.2
QL03p029028 Quercus lobata HOM05D011447 ORTHO05D010069 2.2e-14 82.8 112 48.2
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 2.9e-14 82.4 125 44.0
Sabra13G0040600 Salix brachista HOM05D011447 ORTHO05D010069 2.5e-13 79.3 133 41.4
COL.COLO4_15410 Corchorus olitorius HOM05D009218 ORTHO05D010069 4.2e-13 78.6 138 40.6
Ciclev10022688m.g Citrus clementina HOM05D009218 ORTHO05D010069 7.2e-13 77.8 125 40.8
Manes.09G150100 Manihot esculenta HOM05D011447 ORTHO05D010069 7.2e-13 77.8 123 43.1
Potri.013G043800 Populus trichocarpa HOM05D011447 ORTHO05D010069 9.4e-13 77.4 123 43.1
SHI31328 Sapria himalayana HOM05D011447 ORTHO05D010069 2.1e-12 76.3 127 37.0
Eucgr.H04261 Eucalyptus grandis HOM05D009218 ORTHO05D010069 7.9e-12 74.3 133 40.6
Potri.019G013300 Populus trichocarpa HOM05D011447 ORTHO05D010069 7.9e-12 74.3 126 42.9
Gohir.A13G168950 Gossypium hirsutum HOM05D009218 ORTHO05D010069 1.0e-11 73.9 128 43.0
Potri.019G013750 Populus trichocarpa HOM05D011447 ORTHO05D010069 2.3e-11 72.8 122 40.2
Cpa.g.sc162.8 Carica papaya HOM05D009218 ORTHO05D010069 3.9e-11 72.0 116 41.4
Potri.016G093900 Populus trichocarpa HOM05D011447 ORTHO05D010069 3.9e-11 72.0 66 54.5
Gorai.013G186400 Gossypium raimondii HOM05D009218 ORTHO05D010069 1.1e-10 70.5 125 42.4
PGSC0003DMG400023543 Solanum tuberosum HOM05D011340 ORTHO05D010069 3.3e-10 68.9 116 37.9
Manes.08G137000 Manihot esculenta HOM05D011447 ORTHO05D010069 5.7e-10 68.2 121 39.7
Prupe.6G347000 Prunus persica HOM05D009218 ORTHO05D010069 7.4e-10 67.8 131 39.7
FAN14G1769 Fragaria x ananassa HOM05D009218 ORTHO05D010069 9.7e-10 67.4 119 39.5
PGR004G0279 Punica granatum HOM05D011447 ORTHO05D010069 9.7e-10 67.4 47 72.3
Thecc.05G277300 Theobroma cacao HOM05D009218 ORTHO05D010069 9.7e-10 67.4 51 68.6
FvH4_6g02470 Fragaria vesca HOM05D009218 ORTHO05D010069 1.3e-09 67.0 119 39.5
FAN14G5335 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.3e-09 67.0 119 39.5
FAN02G3090 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.7e-09 66.6 119 39.5
FAN09G2898 Fragaria x ananassa HOM05D009218 ORTHO05D010069 1.7e-09 66.6 119 39.5
Nn3g19575 Nelumbo nucifera HOM05D011447 ORTHO05D010069 2.2e-09 66.2 50 70.0
RcHm_v2.0_Chr3g0450331 Rosa chinensis HOM05D009218 ORTHO05D010069 6.3e-09 64.7 100 42.0
ClCG02G016910 Citrullus lanatus HOM05D009218 ORTHO05D010069 8.2e-09 64.3 50 62.0
Phvul.006G103800 Phaseolus vulgaris HOM05D020401 ORTHO05D010069 8.2e-09 64.3 115 34.8
FAN05G0115 Fragaria x ananassa HOM05D009218 ORTHO05D010069 3.1e-08 62.4 118 38.1
FAN05G4900 Fragaria x ananassa HOM05D009218 ORTHO05D010069 3.1e-08 62.4 118 38.1
Nitab4.5_0008548g0020 Nicotiana tabacum HOM05D011340 ORTHO05D010069 5.3e-08 61.6 114 39.5
VMungo0540G0127 Vigna mungo HOM05D020401 ORTHO05D010069 9.1e-08 60.8 123 35.8
Nitab4.5_0000687g0100 Nicotiana tabacum HOM05D011340 ORTHO05D010069 1.2e-07 60.5 113 38.9
Gohir.D13G174325 Gossypium hirsutum HOM05D009218 ORTHO05D010069 1.5e-07 60.1 50 68.0
CsaV3_2G003860 Cucumis sativus L. HOM05D009218 ORTHO05D010069 2.6e-07 59.3 41 68.3
CsaV3_2G003870 Cucumis sativus L. HOM05D009218 ORTHO05D010069 2.6e-07 59.3 143 33.6
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 2.6e-07 59.3 44 63.6
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 2.6e-07 59.3 44 63.6
Sc20g0000500 Simmondsia chinensis HOM05D009218 ORTHO05D010069 3.4e-07 58.9 78 46.2
PGSC0003DMG400001001 Solanum tuberosum HOM05D011340 ORTHO05D010069 3.4e-07 58.9 109 35.8
Atru.chr2.882 Acer truncatum HOM05D009218 ORTHO05D010069 4.5e-07 58.5 52 63.5
CAN.G1465.2 Capsicum annuum HOM05D011340 ORTHO05D010069 4.5e-07 58.5 41 68.3
CiPaw.07G070100 Carya illinoinensis HOM05D009218 ORTHO05D010069 4.5e-07 58.5 61 55.7
CiPaw.07G070200 Carya illinoinensis HOM05D009218 ORTHO05D010069 4.5e-07 58.5 51 58.8
Sed0020224 Sechium edule HOM05D009218 ORTHO05D010069 5.9e-07 58.2 42 66.7
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 7.7e-07 57.8 52 55.8
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 7.7e-07 57.8 52 55.8
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 7.7e-07 57.8 52 55.8
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.0e-06 57.4 51 58.8
MELO3C004409.2 Cucumis melo HOM05D009218 ORTHO05D010069 1.0e-06 57.4 41 65.9
Glyma.03G249100 Glycine max HOM05D020401 ORTHO05D010069 1.0e-06 57.4 134 32.1
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.0e-06 57.4 81 43.2
MELO3C004408.2 Cucumis melo HOM05D009218 ORTHO05D010069 1.3e-06 57.0 140 38.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.7e-06 56.6 49 61.2
QL03p029061 Quercus lobata HOM05D009218 ORTHO05D010069 2.2e-06 56.2 118 36.4
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.9e-06 55.8 49 61.2
Nitab4.5_0000930g0050 Nicotiana tabacum HOM05D011340 ORTHO05D010069 2.9e-06 55.8 38 68.4
QL03p028359 Quercus lobata HOM05D009218 ORTHO05D010069 2.9e-06 55.8 118 36.4
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 3.8e-06 55.5 47 61.7
Nitab4.5_0009599g0020 Nicotiana tabacum HOM05D011340 ORTHO05D010069 3.8e-06 55.5 37 70.3
Nitab4.5_0022515g0010 Nicotiana tabacum HOM05D011340 ORTHO05D010069 5.0e-06 55.1 38 73.7
CAN.G1256.3 Capsicum annuum HOM05D011340 ORTHO05D010069 8.5e-06 54.3 101 36.6
ClCG02G016900 Citrullus lanatus HOM05D009218 ORTHO05D010069 8.5e-06 54.3 62 53.2
Sed0021944 Sechium edule HOM05D009218 ORTHO05D010069 8.5e-06 54.3 46 58.7
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 8.5e-06 54.3 112 38.4


User provided reference genes

Program Settings