Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.7e-120 436.0 225 100.0
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.8e-70 269.2 212 75.0
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.9e-64 248.8 207 70.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 8.4e-59 231.1 152 81.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 2.4e-58 229.6 149 80.5
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 3.5e-57 225.7 217 62.7
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 7.4e-55 218.0 145 78.6
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.3e-54 217.2 216 60.6
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 2.1e-54 216.5 141 78.0
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 3.6e-54 215.7 218 59.6
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.8e-53 213.4 148 76.4
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 2.4e-53 213.0 137 81.8
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 3.1e-53 212.6 141 78.0
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 3.1e-53 212.6 180 66.1
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.0e-52 209.9 142 78.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.6e-52 209.5 141 76.6
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 3.4e-52 209.1 142 76.1
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 4.5e-52 208.8 142 77.5
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.5e-52 208.8 144 77.1
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 5.8e-52 208.4 143 76.9
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 7.6e-52 208.0 139 82.0
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 7.6e-52 208.0 134 81.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.9e-52 207.6 141 75.9
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 9.9e-52 207.6 158 67.1
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.3e-51 207.2 143 75.5
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 2.2e-51 206.5 141 75.2
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.9e-51 206.1 146 71.9
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 2.9e-51 206.1 143 76.9
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 3.8e-51 205.7 141 75.2
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 4.9e-51 205.3 196 61.7
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 8.4e-51 204.5 195 58.5
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 8.4e-51 204.5 188 63.3
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.1e-50 204.1 155 72.3
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.4e-50 203.8 177 60.5
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 3.2e-50 202.6 148 74.3
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.2e-50 202.2 140 72.1
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 4.2e-50 202.2 141 77.3
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.2e-49 200.7 124 79.8
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.2e-49 200.7 150 69.3
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 3.5e-49 199.1 140 75.7
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 7.9e-49 198.0 181 61.9
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.0e-48 197.6 181 60.8
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.8e-48 196.8 143 70.6
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 2.3e-48 196.4 205 56.6
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 3.0e-48 196.1 117 80.3
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 5.1e-48 195.3 203 56.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 5.1e-48 195.3 141 73.0
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 6.7e-48 194.9 138 72.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 8.7e-48 194.5 124 79.0
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 8.7e-48 194.5 194 60.3
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.1e-47 194.1 138 72.5
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.5e-47 193.7 196 59.7
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.9e-47 193.4 142 73.2
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 2.5e-47 193.0 132 72.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 4.3e-47 192.2 195 56.9
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.3e-47 192.2 146 70.5
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.3e-46 190.7 108 82.4
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 1.3e-46 190.7 137 71.5
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.3e-46 190.7 109 83.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 4.8e-46 188.7 169 60.4
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.8e-46 188.7 146 69.2
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 4.8e-46 188.7 132 70.5
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-45 187.6 181 59.1
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.4e-45 187.2 141 68.1
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 3.1e-45 186.0 185 59.5
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 6.9e-45 184.9 96 87.5
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 9.0e-45 184.5 135 69.6
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.5e-44 183.7 212 54.7
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 2.0e-44 183.3 144 63.9
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 2.0e-44 183.3 137 69.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 2.0e-44 183.3 137 69.3
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.4e-44 182.6 109 75.2
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 5.8e-44 181.8 206 54.9
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 7.6e-44 181.4 202 55.0
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.0e-43 181.0 185 57.8
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.0e-43 181.0 135 68.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-43 179.9 202 54.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-43 179.9 202 54.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 2.2e-43 179.9 202 54.5
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.9e-43 179.5 202 54.5
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.8e-43 179.1 142 69.7
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.5e-42 176.4 217 49.3
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.0e-41 171.8 176 55.7
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 3.9e-40 169.1 124 64.5
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 2.5e-39 166.4 187 57.2
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 4.8e-38 162.2 109 72.5
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 4.8e-38 162.2 91 85.7
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.1e-37 161.0 120 67.5
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.4e-37 160.6 135 63.0
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.4e-37 160.6 141 64.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 4.1e-37 159.1 138 56.5
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 7.6e-36 154.8 116 65.5
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.2e-35 153.3 82 87.8
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.6e-33 147.1 191 45.5
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.1e-33 146.7 148 62.8
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 5.1e-32 142.1 165 55.2
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 5.1e-32 142.1 120 59.2
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 1.5e-31 140.6 79 82.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 6.9e-29 131.7 103 58.3
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.2e-28 131.0 160 45.0
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 8.5e-27 124.8 131 51.1
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.7e-25 119.8 131 47.3
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 7.9e-25 118.2 150 54.7
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.1e-23 114.4 159 49.7
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 4.3e-23 112.5 95 52.6
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 5.7e-23 112.1 85 75.3
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-23 111.7 82 73.2
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-23 111.7 82 73.2
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 7.4e-23 111.7 82 73.2
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.2e-22 110.2 125 56.8
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 3.1e-21 106.3 55 89.1
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 4.1e-21 105.9 76 76.3
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 4.1e-21 105.9 56 87.5
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 2.0e-20 103.6 91 59.3
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 5.9e-20 102.1 96 57.3
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.9e-19 99.8 49 83.7
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.9e-18 97.1 85 56.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 4.2e-18 95.9 59 74.6
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.0e-15 87.0 149 34.2
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-12 77.4 51 64.7
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 6.5e-11 72.0 50 74.0
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 2.1e-09 67.0 95 48.4
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 4.7e-09 65.9 118 47.5
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 4.4e-07 59.3 71 52.1
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 7.5e-07 58.5 124 41.1
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.2e-06 57.0 75 52.0
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.2e-06 57.0 75 52.0
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 2.8e-06 56.6 41 73.2
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.2e-06 55.1 40 65.0


User provided reference genes

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