Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0171500 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.1e-66 255.8 148 100.0
Rhsim12G0155600 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.3e-17 92.8 47 89.4
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 1.1e-09 67.4 45 73.3
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 1.4e-09 67.0 45 71.1
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.6e-08 62.8 45 64.4
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 3.4e-08 62.4 45 64.4
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 3.4e-08 62.4 45 64.4
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 5.8e-08 61.6 45 66.7
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 7.6e-08 61.2 45 64.4
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 9.9e-08 60.8 45 62.2
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 1.3e-07 60.5 45 64.4
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 1.3e-07 60.5 45 64.4
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.7e-07 60.1 45 62.2
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.7e-07 60.1 45 62.2
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.7e-07 60.1 45 64.4
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.7e-07 60.1 42 66.7
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.2e-07 59.7 45 62.2
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 2.2e-07 59.7 45 62.2
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 2.9e-07 59.3 46 58.7
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 2.9e-07 59.3 44 63.6
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 3.8e-07 58.9 39 66.7
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 3.8e-07 58.9 45 60.0
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 6.4e-07 58.2 44 61.4
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 6.4e-07 58.2 44 61.4
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 6.4e-07 58.2 45 60.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 8.4e-07 57.8 45 62.2
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 1.4e-06 57.0 45 57.8
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 1.4e-06 57.0 45 57.8
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 1.4e-06 57.0 44 61.4
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 1.4e-06 57.0 45 60.0
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 1.9e-06 56.6 45 60.0
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.9e-06 56.6 45 62.2
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.9e-06 56.6 43 60.5
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.9e-06 56.6 43 60.5
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 2.4e-06 56.2 45 60.0
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 2.4e-06 56.2 45 57.8
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 2.4e-06 56.2 46 54.3
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 2.4e-06 56.2 45 55.6
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 2.4e-06 56.2 44 59.1
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 3.2e-06 55.8 44 59.1
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 3.2e-06 55.8 43 60.5
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 3.2e-06 55.8 45 57.8
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 4.2e-06 55.5 42 61.9
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 4.2e-06 55.5 44 59.1
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 4.2e-06 55.5 42 61.9
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 5.4e-06 55.1 45 55.6
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 5.4e-06 55.1 45 60.0
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 7.1e-06 54.7 44 59.1
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 7.1e-06 54.7 43 58.1
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 7.1e-06 54.7 45 55.6
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 7.1e-06 54.7 39 64.1
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 9.2e-06 54.3 44 56.8
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 9.2e-06 54.3 44 56.8
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 9.2e-06 54.3 43 60.5
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 9.2e-06 54.3 42 57.1
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 9.2e-06 54.3 46 54.3


User provided reference genes

Program Settings