Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 3.0e-174 615.1 325 100.0
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 7.2e-136 487.6 371 74.1
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.6e-125 452.6 322 76.1
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 5.9e-122 441.4 326 73.6
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 7.5e-101 371.3 328 64.9
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.1e-99 367.5 330 64.5
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 1.1e-99 367.5 327 63.9
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 3.5e-98 362.5 329 64.4
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 4.6e-98 362.1 319 63.9
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 2.5e-96 356.3 326 64.7
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 5.6e-96 355.1 326 63.5
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 2.1e-95 353.2 323 63.8
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 1.4e-94 350.5 324 61.1
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.3e-94 349.7 259 75.7
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 2.3e-94 349.7 323 62.5
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 3.1e-94 349.4 323 62.2
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 3.1e-94 349.4 323 62.2
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.5e-93 347.1 324 61.1
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 4.4e-93 345.5 312 62.2
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 9.8e-93 344.4 322 62.1
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 1.7e-92 343.6 312 63.5
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 2.2e-92 343.2 267 68.5
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 2.9e-92 342.8 314 61.8
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 4.9e-92 342.0 329 60.2
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.3e-92 341.3 318 61.9
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 1.4e-91 340.5 324 58.6
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 5.4e-91 338.6 302 61.3
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 9.2e-91 337.8 261 69.3
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 4.6e-90 335.5 267 67.4
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.9e-88 330.1 322 60.9
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 5.6e-88 328.6 261 67.4
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 9.5e-88 327.8 280 63.9
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 9.5e-88 327.8 291 62.2
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 2.1e-87 326.6 275 62.9
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 4.7e-87 325.5 324 58.6
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 4.7e-87 325.5 300 62.7
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 1.8e-86 323.6 298 60.7
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 1.8e-86 323.6 265 65.7
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 2.3e-86 323.2 325 58.2
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 2.3e-86 323.2 298 60.4
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 4.0e-86 322.4 260 66.2
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 6.8e-86 321.6 335 57.3
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.5e-85 320.5 267 64.4
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 1.5e-85 320.5 320 57.2
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 9.8e-85 317.8 278 60.4
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 9.8e-85 317.8 322 57.5
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 9.8e-85 317.8 324 56.2
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 1.7e-84 317.0 262 64.5
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 6.4e-84 315.1 299 57.5
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 1.1e-83 314.3 326 56.4
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 1.9e-83 313.5 301 58.1
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 1.9e-83 313.5 301 58.1
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 1.9e-83 313.5 310 59.0
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 4.1e-83 312.4 324 54.9
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 4.1e-83 312.4 338 55.9
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 5.4e-83 312.0 286 60.1
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 7.1e-83 311.6 325 56.9
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 1.6e-82 310.5 307 58.3
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.1e-82 310.1 290 59.7
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 1.0e-81 307.8 320 55.0
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 2.3e-81 306.6 309 56.6
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 3.0e-81 306.2 324 55.2
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 6.6e-81 305.1 301 57.5
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 8.6e-81 304.7 313 59.4
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 8.6e-81 304.7 325 55.4
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.5e-80 303.9 292 58.2
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 4.3e-80 302.4 297 57.9
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 9.5e-80 301.2 294 56.8
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 1.6e-79 300.4 211 75.4
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 3.6e-79 299.3 235 66.0
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 4.7e-79 298.9 302 55.3
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.7e-79 298.9 337 56.1
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 8.1e-79 298.1 328 57.3
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.3e-78 296.6 337 55.5
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.1e-78 296.2 337 56.4
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 4.0e-78 295.8 326 57.1
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 3.4e-77 292.7 301 57.8
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 7.6e-77 291.6 324 54.0
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 1.7e-76 290.4 241 64.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.9e-76 289.7 226 65.5
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 4.9e-76 288.9 325 56.6
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 2.7e-74 283.1 301 55.5
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 2.3e-73 280.0 282 55.3
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 4.3e-72 275.8 291 58.8
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 2.1e-71 273.5 319 57.4
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 6.2e-71 271.9 324 54.0
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 4.0e-70 269.2 224 66.5
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 1.5e-69 267.3 289 55.0
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 4.4e-69 265.8 266 53.4
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 4.9e-68 262.3 301 50.2
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.3e-65 254.2 228 59.2
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 3.3e-64 249.6 316 50.0
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 2.1e-63 246.9 188 68.6
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 6.4e-60 235.3 257 58.8
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.5e-58 229.6 222 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 9.0e-54 214.9 255 47.1
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 1.9e-51 207.2 151 72.8
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 4.3e-48 196.1 257 43.6
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 7.4e-48 195.3 327 45.9
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 1.3e-47 194.5 211 49.3
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 1.2e-45 188.0 206 54.9
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 6.0e-42 175.6 255 41.6
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 8.2e-39 165.2 135 63.7
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 4.1e-38 162.9 120 70.8
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 4.5e-37 159.5 180 53.9
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.0e-36 158.3 114 72.8
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 5.5e-35 152.5 160 50.6
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 3.0e-33 146.7 120 65.8
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 8.7e-33 145.2 185 44.9
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 1.5e-32 144.4 118 61.9
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 4.3e-32 142.9 120 61.7
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 2.2e-31 140.6 176 50.6
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 9.1e-30 135.2 212 44.8
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 9.7e-24 115.2 242 39.7
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.5e-16 91.3 131 49.6
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 1.7e-15 87.8 72 69.4
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.7e-15 87.8 74 67.6
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.2e-10 71.6 105 44.8
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 2.3e-09 67.4 46 71.7
FAN16G0199 Fragaria x ananassa HOM05D000780 ORTHO05D210745 5.3e-06 56.2 55 52.7


User provided reference genes

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