Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0167400 Rhododendron simsii HOM05D003590 ORTHO05D004290 3.2e-43 177.9 85 100.0
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 3.1e-14 81.6 40 100.0
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 3.1e-14 81.6 40 100.0
Actinidia06797 Actinidia chinensis HOM05D003590 ORTHO05D004290 5.9e-13 77.4 40 92.5
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 2.5e-11 72.0 40 85.0
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.2e-11 71.6 40 85.0
CSS0007792 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 5.5e-11 70.9 40 82.5
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 5.5e-11 70.9 40 82.5
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 1.2e-10 69.7 40 80.0
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 1.6e-10 69.3 40 80.0
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.6e-10 69.3 40 80.0
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 2.7e-10 68.6 40 80.0
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 7.9e-10 67.0 44 75.0
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 1.0e-09 66.6 40 77.5
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 1.4e-09 66.2 40 75.0
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 1.4e-09 66.2 40 75.0
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 5.1e-09 64.3 40 77.5
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.1e-09 64.3 40 72.5
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 5.1e-09 64.3 40 72.5
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 5.1e-09 64.3 40 72.5
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 5.1e-09 64.3 40 75.0
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 6.7e-09 63.9 40 72.5
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.7e-09 63.9 40 72.5
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.7e-09 63.9 40 72.5
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 6.7e-09 63.9 40 72.5
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 6.7e-09 63.9 40 72.5
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 8.8e-09 63.5 38 76.3
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 1.1e-08 63.2 40 70.0
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.5e-08 62.8 40 70.0
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.5e-08 62.8 40 72.5
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 2.5e-08 62.0 41 78.0
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 2.5e-08 62.0 41 73.2
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 2.5e-08 62.0 40 70.0
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 2.5e-08 62.0 38 73.7
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.5e-08 62.0 40 72.5
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 3.3e-08 61.6 40 72.5
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 70.0
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 72.5
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 67.5
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 67.5
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 67.5
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 70.0
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 75.0
GSVIVG01036624001 Vitis vinifera HOM05D003590 ORTHO05D004290 4.3e-08 61.2 40 75.0
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 5.7e-08 60.8 40 67.5
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 5.7e-08 60.8 40 70.0
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 7.4e-08 60.5 40 75.0
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 9.7e-08 60.1 40 65.0
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 9.7e-08 60.1 40 67.5
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 9.7e-08 60.1 40 72.5
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 9.7e-08 60.1 40 72.5
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.7e-07 59.3 40 67.5
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.7e-07 59.3 40 67.5
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 2.2e-07 58.9 40 72.5
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 2.2e-07 58.9 40 70.0
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 2.2e-07 58.9 40 70.0
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 3.7e-07 58.2 40 70.0
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 3.7e-07 58.2 40 67.5
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 3.7e-07 58.2 40 67.5
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 3.7e-07 58.2 40 67.5
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 4.8e-07 57.8 40 75.0
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 4.8e-07 57.8 40 70.0
Oeu010165.1 Olea europaea HOM05D003590 ORTHO05D004290 4.8e-07 57.8 40 67.5
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 4.8e-07 57.8 41 63.4
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 6.3e-07 57.4 40 65.0
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 6.3e-07 57.4 40 70.0
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.3e-07 57.4 40 67.5
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 6.3e-07 57.4 40 67.5
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 1.1e-06 56.6 40 67.5
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 1.1e-06 56.6 40 67.5
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 1.1e-06 56.6 40 67.5
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.1e-06 56.6 40 72.5
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 67.5
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 67.5
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 60.0
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 60.0
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 67.5
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 67.5
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 70.0
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 62.5
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 1.4e-06 56.2 40 65.0
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 1.8e-06 55.8 40 67.5
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 1.8e-06 55.8 40 70.0
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 2.4e-06 55.5 40 60.0
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 2.4e-06 55.5 41 68.3
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 3.1e-06 55.1 40 65.0
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 3.1e-06 55.1 40 65.0
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 3.1e-06 55.1 40 67.5
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 3.1e-06 55.1 40 67.5
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.1e-06 55.1 42 66.7
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 4.1e-06 54.7 40 65.0
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 5.3e-06 54.3 40 65.0
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 6.9e-06 53.9 40 67.5
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 6.9e-06 53.9 38 63.2
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 9.1e-06 53.5 40 67.5
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 9.1e-06 53.5 40 55.0
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 9.1e-06 53.5 41 63.4
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 9.1e-06 53.5 42 57.1
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 9.1e-06 53.5 40 62.5


User provided reference genes

Program Settings