Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.0e-131 471.5 245 100.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.1e-96 357.1 245 79.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.1e-91 340.5 243 77.4
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 3.1e-83 312.4 245 70.2
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 9.1e-83 310.8 245 68.6
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-81 307.4 242 68.2
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-81 307.4 245 68.2
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 7.9e-79 297.7 242 67.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.4e-78 297.0 245 67.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.4e-78 297.0 245 66.5
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.8e-78 296.6 245 67.3
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 2.3e-78 296.2 243 67.1
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.2e-78 295.0 245 67.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 6.7e-78 294.7 245 67.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.5e-77 293.5 243 65.8
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.5e-77 293.5 245 66.5
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.0e-77 293.1 242 66.5
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.0e-77 293.1 245 65.7
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 2.6e-77 292.7 245 64.9
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 5.7e-77 291.6 242 65.3
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 7.4e-77 291.2 245 64.5
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 9.7e-77 290.8 242 64.9
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 9.7e-77 290.8 245 64.5
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.3e-76 290.4 243 65.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.3e-76 290.4 242 64.9
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.3e-76 290.4 242 64.5
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 1.7e-76 290.0 242 64.5
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 2.2e-76 289.7 244 65.2
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 2.8e-76 289.3 242 65.3
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.7e-76 288.9 245 64.9
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 4.8e-76 288.5 245 64.1
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 6.3e-76 288.1 243 65.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 6.3e-76 288.1 245 64.9
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 6.3e-76 288.1 245 64.1
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 8.2e-76 287.7 245 63.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 8.2e-76 287.7 242 64.5
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 8.2e-76 287.7 242 63.6
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-75 287.3 245 64.1
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.8e-75 286.6 241 64.7
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.8e-75 286.6 245 63.7
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.4e-75 286.2 245 64.1
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 3.1e-75 285.8 243 62.6
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.1e-75 285.8 242 63.6
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.1e-75 285.8 245 64.9
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.1e-75 285.8 245 63.7
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.1e-75 285.4 240 65.0
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 4.1e-75 285.4 245 64.9
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 5.3e-75 285.0 242 63.2
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 5.3e-75 285.0 242 64.0
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 7.0e-75 284.6 245 64.1
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 7.0e-75 284.6 245 63.3
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 9.1e-75 284.3 243 62.1
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.2e-74 283.9 240 64.6
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.2e-74 283.9 245 64.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.2e-74 283.9 242 62.4
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 1.6e-74 283.5 245 64.1
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.6e-74 283.5 245 63.3
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.6e-74 283.5 242 63.2
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.6e-74 283.5 243 64.6
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.0e-74 283.1 245 64.5
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.6e-74 282.7 245 62.9
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 2.6e-74 282.7 243 64.6
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 2.6e-74 282.7 244 62.7
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 2.6e-74 282.7 244 62.7
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 3.5e-74 282.3 245 62.9
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 4.5e-74 282.0 245 62.4
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.3e-73 280.4 243 61.7
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.7e-73 280.0 258 61.6
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.7e-73 280.0 251 61.0
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.7e-73 280.0 245 62.4
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 2.2e-73 279.6 242 62.0
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 2.2e-73 279.6 245 62.4
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 2.9e-73 279.3 242 63.2
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 6.5e-73 278.1 242 62.8
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.5e-73 277.7 245 62.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.5e-72 276.9 245 62.4
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.9e-72 276.6 243 60.9
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.5e-72 276.2 242 62.4
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.2e-72 275.8 245 62.4
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.2e-72 275.8 244 62.3
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 4.2e-72 275.4 240 62.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 9.4e-72 274.2 242 62.4
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.6e-71 272.3 242 62.0
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 8.0e-71 271.2 245 60.0
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.0e-70 270.8 245 62.0
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.0e-70 270.8 231 62.8
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.4e-70 270.4 244 62.3
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 1.4e-70 270.4 244 62.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.4e-70 270.4 240 62.1
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.8e-70 270.0 247 61.5
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 2.3e-70 269.6 245 62.4
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.3e-70 269.6 245 61.2
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 4.0e-70 268.9 244 62.3
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.0e-70 268.9 245 61.2
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.2e-70 268.5 244 62.3
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 5.2e-70 268.5 242 61.6
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 6.7e-70 268.1 242 59.9
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 6.7e-70 268.1 245 61.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.2e-69 267.3 245 60.4
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.2e-69 267.3 242 60.7
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.2e-69 267.3 245 61.6
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 2.0e-69 266.5 242 60.3
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.6e-69 266.2 244 61.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.6e-69 266.2 245 60.8
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.3e-69 265.8 245 60.4
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 4.4e-69 265.4 245 60.8
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 9.7e-69 264.2 236 61.0
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.7e-68 263.5 243 60.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 1.7e-68 263.5 242 60.7
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 2.2e-68 263.1 245 60.8
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 3.7e-68 262.3 245 59.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 3.1e-67 259.2 244 59.4
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 5.9e-66 255.0 280 54.3
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.7e-65 253.4 245 56.3
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 1.7e-65 253.4 245 57.6
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.7e-65 253.4 242 56.6
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.2e-65 253.1 245 56.3
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.2e-65 253.1 243 55.1
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.9e-65 252.7 243 56.4
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.0e-65 251.9 243 56.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.1e-64 250.8 365 48.8
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.9e-64 250.0 243 56.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 6.8e-62 241.5 244 52.9
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 8.6e-57 224.6 188 63.3
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 1.9e-56 223.4 254 53.5
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 3.2e-56 222.6 242 53.7
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.8e-54 216.9 183 63.4
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 5.2e-54 215.3 240 47.5
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 9.8e-53 211.1 237 48.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 1.7e-52 210.3 246 48.0
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 3.7e-52 209.1 246 53.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.4e-51 206.5 243 51.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 6.1e-47 191.8 245 48.6
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.2e-45 187.6 172 61.6
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 3.4e-45 186.0 238 42.4
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 5.6e-40 168.7 213 45.1
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 6.4e-36 155.2 242 43.0
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 7.0e-35 151.8 151 55.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 7.0e-35 151.8 151 56.3
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 7.8e-34 148.3 150 54.0
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 6.6e-33 145.2 188 42.6
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.0e-29 133.7 240 34.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.6e-29 133.3 246 40.7
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 2.7e-26 123.2 240 30.8
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 7.8e-26 121.7 131 51.9
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 2.0e-21 107.1 83 68.7
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.4e-11 74.3 183 31.7
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 2.1e-10 70.5 116 35.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 4.6e-10 69.3 128 39.8
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.7e-09 67.4 133 36.1
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 3.9e-09 66.2 54 68.5


User provided reference genes

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