Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0150700 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.1e-164 583.2 293 100.0
Rhsim03G0048600 Rhododendron simsii HOM05D005342 ORTHO05D006925 2.6e-121 439.1 267 86.5
Rhsim03G0048000 Rhododendron simsii HOM05D005342 ORTHO05D006925 2.3e-101 372.9 261 77.8
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 7.2e-95 351.3 257 73.2
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.5e-87 327.0 249 71.1
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.5e-87 327.0 249 71.1
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 4.3e-87 325.5 254 68.9
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 2.1e-86 323.2 254 69.3
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 4.7e-86 322.0 255 68.6
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 1.8e-85 320.1 249 66.7
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 2.0e-84 316.6 255 67.5
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 3.4e-84 315.8 254 64.6
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 4.4e-84 315.5 254 66.9
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 7.5e-84 314.7 255 67.1
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 9.8e-84 314.3 255 65.9
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.3e-83 313.9 249 66.7
Gohir.A01G185820 Gossypium hirsutum HOM05D005342 ORTHO05D006925 1.7e-83 313.5 255 66.7
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 2.2e-83 313.2 257 66.1
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 6.4e-83 311.6 254 66.1
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 6.4e-83 311.6 254 66.1
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 8.3e-83 311.2 254 64.6
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 8.3e-83 311.2 254 66.1
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 1.1e-82 310.8 249 68.7
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 1.1e-82 310.8 255 63.5
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 2.4e-82 309.7 254 65.7
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 2.4e-82 309.7 254 65.7
FAN25G1408 Fragaria x ananassa HOM05D005342 ORTHO05D006925 2.4e-82 309.7 260 64.2
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 3.2e-82 309.3 255 65.1
AUR62020653 Chenopodium quinoa HOM05D005342 ORTHO05D006925 4.1e-82 308.9 249 65.1
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 4.1e-82 308.9 255 64.7
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 5.4e-82 308.5 254 65.4
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 5.4e-82 308.5 255 63.9
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 9.2e-82 307.8 254 65.4
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 9.2e-82 307.8 249 64.3
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 1.2e-81 307.4 255 64.3
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 1.2e-81 307.4 254 65.0
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 1.2e-81 307.4 257 66.5
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 1.6e-81 307.0 254 66.5
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 1.6e-81 307.0 254 64.6
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 1.6e-81 307.0 258 66.3
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 2.0e-81 306.6 249 65.5
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 2.0e-81 306.6 253 66.8
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 3.5e-81 305.8 254 63.8
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 3.5e-81 305.8 254 63.8
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 4.6e-81 305.4 254 65.4
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 6.0e-81 305.1 253 64.8
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 7.8e-81 304.7 256 64.1
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 1.3e-80 303.9 237 69.2
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 1.3e-80 303.9 255 63.1
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 1.7e-80 303.5 254 65.4
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 1.7e-80 303.5 254 63.0
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 2.3e-80 303.1 255 66.3
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 3.9e-80 302.4 255 62.4
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 6.6e-80 301.6 260 64.6
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 8.6e-80 301.2 258 62.0
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 1.1e-79 300.8 254 63.8
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 1.1e-79 300.8 254 64.2
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 1.9e-79 300.1 248 65.3
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 2.5e-79 299.7 257 61.5
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 3.3e-79 299.3 254 63.0
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 4.3e-79 298.9 254 63.4
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 4.3e-79 298.9 254 64.2
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 7.3e-79 298.1 255 63.1
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 1.6e-78 297.0 254 63.4
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 2.1e-78 296.6 254 63.4
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 2.1e-78 296.6 255 62.0
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 2.8e-78 296.2 255 61.2
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 3.6e-78 295.8 255 62.0
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 4.7e-78 295.4 248 63.3
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 6.2e-78 295.0 254 61.4
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 8.0e-78 294.7 254 61.8
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 8.0e-78 294.7 254 61.8
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 8.0e-78 294.7 248 63.7
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 1.1e-77 294.3 286 58.4
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 1.4e-77 293.9 255 63.5
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 1.4e-77 293.9 254 62.6
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 1.8e-77 293.5 254 62.6
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 2.3e-77 293.1 254 62.2
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 3.1e-77 292.7 254 61.4
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 3.1e-77 292.7 254 61.4
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 3.1e-77 292.7 283 54.1
Eucgr.D00013 Eucalyptus grandis HOM05D005342 ORTHO05D006925 4.0e-77 292.4 254 63.0
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 4.0e-77 292.4 254 60.2
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 4.0e-77 292.4 254 60.2
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 5.2e-77 292.0 254 61.4
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 5.2e-77 292.0 254 61.4
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 5.2e-77 292.0 254 61.4
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 5.2e-77 292.0 254 61.4
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 5.2e-77 292.0 254 61.4
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 6.8e-77 291.6 254 61.4
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 6.8e-77 291.6 254 61.4
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 1.2e-76 290.8 268 60.1
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 1.2e-76 290.8 254 61.0
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 1.2e-76 290.8 254 61.0
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 4.4e-76 288.9 254 59.4
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 1.7e-75 287.0 254 60.6
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 1.9e-74 283.5 253 60.1
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 5.4e-74 282.0 258 61.6
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 3.6e-70 269.2 254 57.1
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 4.0e-69 265.8 234 61.5
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 3.4e-68 262.7 228 60.5
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 4.4e-68 262.3 231 61.9
Cpa.g.sc1627.2 Carica papaya HOM05D005342 ORTHO05D006925 9.9e-68 261.2 232 60.3
AUR62043831 Chenopodium quinoa HOM05D005342 ORTHO05D006925 2.2e-67 260.0 225 60.4
CDE06G1455 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 3.5e-65 252.7 231 56.7
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 6.6e-64 248.4 255 56.9
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 5.2e-61 238.8 244 56.1
SGA_v2.0_scaffold175G39327 Striga asiatica HOM05D005342 ORTHO05D006925 1.8e-53 213.8 213 54.9
HPP92_001865 Vanilla planifolia HOM05D005342 ORTHO05D006925 3.8e-51 206.1 192 59.4
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 6.0e-49 198.7 254 50.0
Cc09_g05190 Coffea canephora HOM05D005342 ORTHO05D006925 2.1e-46 190.3 106 85.8
CSS0007057 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.2e-44 184.5 200 58.0
Prupe.4G117700 Prunus persica HOM05D005342 ORTHO05D006925 1.4e-42 177.6 200 54.0
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 1.9e-42 177.2 256 39.8
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 3.2e-42 176.4 185 54.6
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 3.7e-38 162.9 254 36.6
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 1.4e-37 161.0 254 36.2
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 9.3e-34 148.3 257 33.9
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 6.7e-32 142.1 90 76.7
CSS0009297 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.1e-31 141.4 119 65.5
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.9e-31 140.6 90 72.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.6e-25 120.9 231 33.8
MCO16G643 Micromonas commoda HOM05D005342 ORTHO05D006925 1.7e-19 100.9 246 30.5
BcaB04g18195 Brassica carinata HOM05D005342 ORTHO05D006925 3.3e-15 86.7 135 39.3
Rhsim03G0047900 Rhododendron simsii HOM05D005342 ORTHO05D340316 2.9e-11 73.6 38 94.7
HPP92_001866 Vanilla planifolia HOM05D005342 ORTHO05D006925 8.8e-08 62.0 37 70.3
Oeu016702.1 Olea europaea HOM05D005342 ORTHO05D006925 1.3e-06 58.2 34 73.5
SEGI_08357 Sequoiadendron giganteum HOM05D005342 ORTHO05D006925 3.7e-06 56.6 37 67.6
Atru.chr10.358 Acer truncatum HOM05D002757 ORTHO05D003252 4.8e-06 56.2 36 69.4
BolC8t48183H Brassica oleracea HOM05D005342 ORTHO05D042222 8.2e-06 55.5 38 68.4


User provided reference genes

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